Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq125 89.7 3e-16 seq19044 77.0 2e-12 >seq125 Length=3337254 Score = 89.7 bits (98), Expect = 3e-16 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||| |||||||||||| |||| || ||| |||| ||| |||| ||||| ||| Sbjct 24417 GAAACCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCTG 24476 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | |||| |||| ||||| ||| | |||||||| |||||||||||||||||| Sbjct 24477 CATCGCCAGTCAGCATCGTTTATGGTCGAAACTACGACAGTATCTGATCGTCTTCGA 24533 >seq19044 Length=2450392 Score = 77.0 bits (84), Expect = 2e-12 Identities = 86/115 (75%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||| ||||| |||| || ||| |||| ||| |||| ||||| ||| Sbjct 2385603 GAACCCAAAGGCTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCTG 2385544 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 || | ||| ||||| ||||| ||| |||| |||||||||||||||||||| Sbjct 2385543 CATAGCCAGTTGGCATCGTTTATGGTCGGAACTATGACGGTATCTGATCGTCTTC 2385489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278337832410