Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq125 158 2e-36 seq19044 134 3e-29 seq21327 114 2e-23 seq124 113 8e-23 seq22515 95.1 2e-17 >seq125 Length=3337254 Score = 158 bits (174), Expect = 2e-36 Identities = 182/242 (75%), Gaps = 5/242 (2%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC---GAATACATTAGCAT 130 ||||||||||||||||||| ||||||||||| |||| ||| | |||| ||| Sbjct 24780 TTTACTTTGAAAAAATTAGGGTGTTCAAAGCGGGCCCAAGCTGCCTGGATACCGCAGCTA 24721 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 |||||||| ||||||||| | ||||||||||||||||||| | | || | | ||||| Sbjct 24720 GGAATAATGGAATAGGACC-GTGGTTCTATTTTGTTGGTTTTTGGAACTGAGGCCATGAT 24662 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||| || | | |||| | ||||| | | |||||||||||||||||| | Sbjct 24661 TAAGAGGAATGGCCAGGGGCATTCGTATTACACCGCTAGAGGTGAAATTCTTGGACTGGC 24602 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 |||| || | | |||||| || |||||| |||||||||||||||| |||||||| Sbjct 24601 GCAAGATGGACCAGAGTGAAAGCATTTACCAAGAATGTTTTCATTAATCA-AGAACGAAA 24543 Query 311 GT 312 || Sbjct 24542 GT 24541 >seq19044 Length=2450392 Score = 134 bits (148), Expect = 3e-29 Identities = 201/279 (72%), Gaps = 11/279 (4%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACT-TTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | ||||||||||||||||||| |||| Sbjct 2385207 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCTGAAGTGTTTACTTTGAAAAAATTAGGGTGT 2385266 Query 98 TCAAAGCAGGCC--TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 ||||||| |||| || | |||| ||| || ||||| ||||||||| || ||| Sbjct 2385267 TCAAAGCCGGCCGAGCCGCCTGGATACTGCAGCTAGGGATAATGGAATAGGAC-TGTGGT 2385325 Query 156 TCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAG 215 ||||||| |||||||| | || | | ||||||| |||||| | | |||| | | Sbjct 2385326 TCTATTTGGTTGGTTTTCGGAACTGAGGCCTTGATTAAGAGGGATGGCCAGGGGCATTCG 2385385 Query 216 TATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACT--GCGAAAGC 273 |||| | ||||||||||||||||| | | | | | || |||||||| Sbjct 2385386 TATTGCGCCGCTAGAGGTGAAATTCTTGG----ACAGGCGCAAAGCGTCTGAGCGAAAGC 2385441 Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| |||||||||||||||| |||||||||| Sbjct 2385442 ATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 2385479 >seq21327 Length=701659 Score = 114 bits (126), Expect = 2e-23 Identities = 184/261 (70%), Gaps = 5/261 (2%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCC-AGGACTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | ||||||| ||||||||||| || | Sbjct 691446 ATGCTCTTAGCTGAGTGTCCCGTGGGGCCCAAGTTGTTTACTTAGAAAAAATTAGGGTAT 691505 Query 98 TCAAAGCAGGCC---TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 ||||||| |||| || | |||| ||| |||||||| ||||||||| | | Sbjct 691506 TCAAAGCGGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGAC-CACAG 691564 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| | || | | |||||||| |||||| | | |||| | Sbjct 691565 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGATGGCCAGGGGCATTC 691624 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 | ||| | |||||||||||||||||| ||||| || | |||||||| Sbjct 691625 GCATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA 691684 Query 275 TTCACCAAGGATGTTTTCATT 295 || ||||| ||||||| ||| Sbjct 691685 TTTGCCAAGAATGTTTTTATT 691705 >seq124 Length=16471106 Score = 113 bits (124), Expect = 8e-23 Identities = 131/175 (75%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC---TTTGCTCGAATACATTAGCAT 130 ||||||||||||||||||||||||||||||||| || || | |||| ||| Sbjct 416359 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGACCCGAGCCGCCTGGATACCGCAGCTA 416300 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 |||||||| |||| |||| | ||||||||||||||||||| | || | | ||| | Sbjct 416299 GGAATAATGGAATGGGAC-CGTGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGGT 416241 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 ||| ||||| || |||||| | ||||| | |||||||||||||||||| Sbjct 416240 TAAGAGGGACAGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 416186 >seq22515 Length=1729 Score = 95.1 bits (104), Expect = 2e-17 Identities = 202/296 (68%), Gaps = 22/296 (7%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| || | |||| ||| | |||| | || || ||||| |||| |||||| || Sbjct 1129 TGCTCTTGACCGAGTGTCCCGCGCAGCCGGCCAGTTCACCTTGAACAAATGAGAGTGCTC 1070 Query 100 AAAGCAGGC----CTTT--------GCTCGAATACATTA---GCATGGAATAATAGAATA 144 ||||||||| ||| || ||||| ||| ||||||||| || || | Sbjct 1069 AAAGCAGGCTACTCTTAAAACTAAAGCCCGAATG--TTACCTGCATGGAATGATGAAAGA 1012 Query 145 GGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACC--GCCGTAATGATTAATAGGGATAG 202 || | ||||||||||||| ||||| || ||| | | ||||||| || ||||| | Sbjct 1011 TGAATT-CGGTTCTATTTTGCTGGTT-CTGGGAACCTGAGTTAATGATAAACAGGGACTG 954 Query 203 TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACT 262 ||||||| || ||| | | ||||||||||||| || | ||| ||| Sbjct 953 TCGGGGGCATCCGTACTACGACGCGAGAGGTGAAATTCAATGACCGTCGTAGGACGAACA 894 Query 263 ACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || |||||||| || ||||| |||| ||| || |||| |||||||||| || || Sbjct 893 ACAGCGAAAGCATTTGCCAAGAATGTCTTCGTTGATCA-AGAACGAAAGTCAGAGG 839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914982008512