Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09]
23,819 sequences; 2,301,379,344 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq125 158 2e-36
seq19044 134 3e-29
seq21327 114 2e-23
seq124 113 8e-23
seq22515 95.1 2e-17
>seq125
Length=3337254
Score = 158 bits (174), Expect = 2e-36
Identities = 182/242 (75%), Gaps = 5/242 (2%)
Strand=Plus/Minus
Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC---GAATACATTAGCAT 130
||||||||||||||||||| ||||||||||| |||| ||| | |||| |||
Sbjct 24780 TTTACTTTGAAAAAATTAGGGTGTTCAAAGCGGGCCCAAGCTGCCTGGATACCGCAGCTA 24721
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
|||||||| ||||||||| | ||||||||||||||||||| | | || | | |||||
Sbjct 24720 GGAATAATGGAATAGGACC-GTGGTTCTATTTTGTTGGTTTTTGGAACTGAGGCCATGAT 24662
Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250
||| ||| || | | |||| | ||||| | | |||||||||||||||||| |
Sbjct 24661 TAAGAGGAATGGCCAGGGGCATTCGTATTACACCGCTAGAGGTGAAATTCTTGGACTGGC 24602
Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310
|||| || | | |||||| || |||||| |||||||||||||||| ||||||||
Sbjct 24601 GCAAGATGGACCAGAGTGAAAGCATTTACCAAGAATGTTTTCATTAATCA-AGAACGAAA 24543
Query 311 GT 312
||
Sbjct 24542 GT 24541
>seq19044
Length=2450392
Score = 134 bits (148), Expect = 3e-29
Identities = 201/279 (72%), Gaps = 11/279 (4%)
Strand=Plus/Plus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACT-TTTACTTTGAAAAAATTAGAGTGT 97
|||| ||| ||| |||| ||| || ||| | | | ||||||||||||||||||| ||||
Sbjct 2385207 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCTGAAGTGTTTACTTTGAAAAAATTAGGGTGT 2385266
Query 98 TCAAAGCAGGCC--TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155
||||||| |||| || | |||| ||| || ||||| ||||||||| || |||
Sbjct 2385267 TCAAAGCCGGCCGAGCCGCCTGGATACTGCAGCTAGGGATAATGGAATAGGAC-TGTGGT 2385325
Query 156 TCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAG 215
||||||| |||||||| | || | | ||||||| |||||| | | |||| | |
Sbjct 2385326 TCTATTTGGTTGGTTTTCGGAACTGAGGCCTTGATTAAGAGGGATGGCCAGGGGCATTCG 2385385
Query 216 TATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACT--GCGAAAGC 273
|||| | ||||||||||||||||| | | | | | || ||||||||
Sbjct 2385386 TATTGCGCCGCTAGAGGTGAAATTCTTGG----ACAGGCGCAAAGCGTCTGAGCGAAAGC 2385441
Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312
|| ||||| |||||||||||||||| ||||||||||
Sbjct 2385442 ATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 2385479
>seq21327
Length=701659
Score = 114 bits (126), Expect = 2e-23
Identities = 184/261 (70%), Gaps = 5/261 (2%)
Strand=Plus/Plus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCC-AGGACTTTTACTTTGAAAAAATTAGAGTGT 97
|||| ||| ||| |||| ||| || ||| | | ||||||| ||||||||||| || |
Sbjct 691446 ATGCTCTTAGCTGAGTGTCCCGTGGGGCCCAAGTTGTTTACTTAGAAAAAATTAGGGTAT 691505
Query 98 TCAAAGCAGGCC---TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154
||||||| |||| || | |||| ||| |||||||| ||||||||| | |
Sbjct 691506 TCAAAGCGGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGAC-CACAG 691564
Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214
||||||||||||||||| | || | | |||||||| |||||| | | |||| |
Sbjct 691565 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGATGGCCAGGGGCATTC 691624
Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274
| ||| | |||||||||||||||||| ||||| || | ||||||||
Sbjct 691625 GCATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA 691684
Query 275 TTCACCAAGGATGTTTTCATT 295
|| ||||| ||||||| |||
Sbjct 691685 TTTGCCAAGAATGTTTTTATT 691705
>seq124
Length=16471106
Score = 113 bits (124), Expect = 8e-23
Identities = 131/175 (75%), Gaps = 4/175 (2%)
Strand=Plus/Minus
Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC---TTTGCTCGAATACATTAGCAT 130
||||||||||||||||||||||||||||||||| || || | |||| |||
Sbjct 416359 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGACCCGAGCCGCCTGGATACCGCAGCTA 416300
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
|||||||| |||| |||| | ||||||||||||||||||| | || | | ||| |
Sbjct 416299 GGAATAATGGAATGGGAC-CGTGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGGT 416241
Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245
||| ||||| || |||||| | ||||| | ||||||||||||||||||
Sbjct 416240 TAAGAGGGACAGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 416186
>seq22515
Length=1729
Score = 95.1 bits (104), Expect = 2e-17
Identities = 202/296 (68%), Gaps = 22/296 (7%)
Strand=Plus/Minus
Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99
||| ||| || | |||| ||| | |||| | || || ||||| |||| |||||| ||
Sbjct 1129 TGCTCTTGACCGAGTGTCCCGCGCAGCCGGCCAGTTCACCTTGAACAAATGAGAGTGCTC 1070
Query 100 AAAGCAGGC----CTTT--------GCTCGAATACATTA---GCATGGAATAATAGAATA 144
||||||||| ||| || ||||| ||| ||||||||| || || |
Sbjct 1069 AAAGCAGGCTACTCTTAAAACTAAAGCCCGAATG--TTACCTGCATGGAATGATGAAAGA 1012
Query 145 GGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACC--GCCGTAATGATTAATAGGGATAG 202
|| | ||||||||||||| ||||| || ||| | | ||||||| || ||||| |
Sbjct 1011 TGAATT-CGGTTCTATTTTGCTGGTT-CTGGGAACCTGAGTTAATGATAAACAGGGACTG 954
Query 203 TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACT 262
||||||| || ||| | | ||||||||||||| || | ||| |||
Sbjct 953 TCGGGGGCATCCGTACTACGACGCGAGAGGTGAAATTCAATGACCGTCGTAGGACGAACA 894
Query 263 ACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318
|| |||||||| || ||||| |||| ||| || |||| |||||||||| || ||
Sbjct 893 ACAGCGAAAGCATTTGCCAAGAATGTCTTCGTTGATCA-AGAACGAAAGTCAGAGG 839
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 914982008512
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |