Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09]
23,819 sequences; 2,301,379,344 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq22240 140 1e-30
seq125 123 1e-25
seq19044 118 4e-24
seq39 116 2e-23
seq183 95.1 5e-17
>seq22240
Length=1095
Score = 140 bits (154), Expect = 1e-30
Identities = 103/120 (86%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623
|||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 8 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGTCAGGACGAAGCCAGAGGAAACTCTG 67
Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||||||| || | | |||||| ||||||||||||| ||| | |||||||||||||||
Sbjct 68 GTGGAGGTCCGAAACAGTTCTGACGTGCAAATCGATTGTCTGAACTGGGTATAGGGGCGA 127
>seq125
Length=3337254
Score = 123 bits (136), Expect = 1e-25
Identities = 100/120 (83%), Gaps = 2/120 (2%)
Strand=Plus/Minus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623
|||| |||||||||||||||||||||||||||| ||| ||||||||||||| |||
Sbjct 19225 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGCCAAAGCCAGAGGAAA--CTG 19168
Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||||||| || ||| || ||| ||||||||||| ||||| | |||||||||||||||
Sbjct 19167 GTGGAGGTCCGTAGCTGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 19108
Score = 98.7 bits (108), Expect = 4e-18
Identities = 116/157 (74%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||| ||||||||||||| | || || | |||| | | ||||| |||||||
Sbjct 20656 GAGTCGTGTTGCTTGGGAATGCAGCCCAAAGCAGGTGATAAACTCCATCTAAGGCTAAAT 20597
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| ||| |||||||||| ||||||| || ||||| |||||| |||||| |
Sbjct 20596 ACCGGCACAAGACCGATAGTCAACAAGTACCGTAGGGGAAAGTTGAAAATAACTTTGAAG 20537
Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196
|||||||| || || | ||||| |||| | ||| ||
Sbjct 20536 AGAGAGTTCAAGAGAGCATGAAACTGTTAAGAGGTAA 20500
>seq19044
Length=2450392
Score = 118 bits (130), Expect = 4e-24
Identities = 107/135 (79%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| | ||||| | |||| ||||| |||||||| ||||||||||||| ||| |||
Sbjct 2390353 GAGCATGAGCACATGTGTTAGGACCGGAAAGATGATGAACTATGCCTGGTCCGGGCAAAG 2390412
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
|||||||||||||||||||||| | |||||| ||| ||||||||| || || |
Sbjct 2390413 CCAGAGGAAACTCTGGTGGAGGTCTGTAGCGGTCCTGATGTGCAAATCAGTCATCCGACC 2390472
Query 669 TGGGTATAGGGGCGA 683
|||||||||||||||
Sbjct 2390473 TGGGTATAGGGGCGA 2390487
>seq39
Length=19727151
Score = 116 bits (128), Expect = 2e-23
Identities = 123/161 (76%), Gaps = 1/161 (1%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
||||| |||| |||||||||||| | || ||| |||||| ||| ||||| |||||||
Sbjct 11695671 GAGTCAGGTTGCTTGGGAATGCAGGCCAAAGCGGGTGGTAAACTTCATCTAAGGCTAAAT 11695730
Query 100 ATTGGCCAGAGACCGATAG-CGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158
|| ||| ||||||||||| | ||||||| | | ||||| ||||||| |||||| |
Sbjct 11695731 ATCGGCGTGAGACCGATAGTCAAACAAGTACCGAAAAAGAAAGTTGAAAAGAACTTTGAA 11695790
Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|||||||| || || |||||| |||| | ||| || ||
Sbjct 11695791 GAGAGAGTTCAAGAGGGGGTGAAACTGTTAAGAGGTAAACG 11695831
>seq183
Length=28682327
Score = 95.1 bits (104), Expect = 5e-17
Identities = 70/82 (85%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623
|||| ||| || ||||||||||||||||||||| |||| ||||||| |||||||||||
Sbjct 9414438 TGTTAGGATCCAAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAAAGGAAACTCTG 9414497
Query 624 GTGGAGGCTCGCAGCGGTTCTG 645
||||||| || |||||| |||
Sbjct 9414498 GTGGAGGTCCGTAGCGGTCCTG 9414519
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079489082450
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |