Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq22240 140 1e-30 seq125 123 1e-25 seq19044 118 4e-24 seq39 116 2e-23 seq183 95.1 5e-17 >seq22240 Length=1095 Score = 140 bits (154), Expect = 1e-30 Identities = 103/120 (86%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct 8 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGTCAGGACGAAGCCAGAGGAAACTCTG 67 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || | | |||||| ||||||||||||| ||| | ||||||||||||||| Sbjct 68 GTGGAGGTCCGAAACAGTTCTGACGTGCAAATCGATTGTCTGAACTGGGTATAGGGGCGA 127 >seq125 Length=3337254 Score = 123 bits (136), Expect = 1e-25 Identities = 100/120 (83%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| ||| ||||||||||||| ||| Sbjct 19225 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGCCAAAGCCAGAGGAAA--CTG 19168 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || ||| || ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 19167 GTGGAGGTCCGTAGCTGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 19108 Score = 98.7 bits (108), Expect = 4e-18 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || || | |||| | | ||||| ||||||| Sbjct 20656 GAGTCGTGTTGCTTGGGAATGCAGCCCAAAGCAGGTGATAAACTCCATCTAAGGCTAAAT 20597 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| |||||||||| ||||||| || ||||| |||||| |||||| | Sbjct 20596 ACCGGCACAAGACCGATAGTCAACAAGTACCGTAGGGGAAAGTTGAAAATAACTTTGAAG 20537 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 |||||||| || || | ||||| |||| | ||| || Sbjct 20536 AGAGAGTTCAAGAGAGCATGAAACTGTTAAGAGGTAA 20500 >seq19044 Length=2450392 Score = 118 bits (130), Expect = 4e-24 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||| | |||| ||||| |||||||| ||||||||||||| ||| ||| Sbjct 2390353 GAGCATGAGCACATGTGTTAGGACCGGAAAGATGATGAACTATGCCTGGTCCGGGCAAAG 2390412 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| | |||||| ||| ||||||||| || || | Sbjct 2390413 CCAGAGGAAACTCTGGTGGAGGTCTGTAGCGGTCCTGATGTGCAAATCAGTCATCCGACC 2390472 Query 669 TGGGTATAGGGGCGA 683 ||||||||||||||| Sbjct 2390473 TGGGTATAGGGGCGA 2390487 >seq39 Length=19727151 Score = 116 bits (128), Expect = 2e-23 Identities = 123/161 (76%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||| |||||||||||| | || ||| |||||| ||| ||||| ||||||| Sbjct 11695671 GAGTCAGGTTGCTTGGGAATGCAGGCCAAAGCGGGTGGTAAACTTCATCTAAGGCTAAAT 11695730 Query 100 ATTGGCCAGAGACCGATAG-CGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || ||| ||||||||||| | ||||||| | | ||||| ||||||| |||||| | Sbjct 11695731 ATCGGCGTGAGACCGATAGTCAAACAAGTACCGAAAAAGAAAGTTGAAAAGAACTTTGAA 11695790 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || |||||| |||| | ||| || || Sbjct 11695791 GAGAGAGTTCAAGAGGGGGTGAAACTGTTAAGAGGTAAACG 11695831 >seq183 Length=28682327 Score = 95.1 bits (104), Expect = 5e-17 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| ||| || ||||||||||||||||||||| |||| ||||||| ||||||||||| Sbjct 9414438 TGTTAGGATCCAAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAAAGGAAACTCTG 9414497 Query 624 GTGGAGGCTCGCAGCGGTTCTG 645 ||||||| || |||||| ||| Sbjct 9414498 GTGGAGGTCCGTAGCGGTCCTG 9414519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079489082450