Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq22443 241 3e-61 seq23817 194 4e-47 >seq22443 Length=335 Score = 241 bits (266), Expect = 3e-61 Identities = 194/235 (83%), Gaps = 17/235 (7%) Strand=Plus/Plus Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 7 GCTAACCCCATCACTTAACCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 66 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 ||||||||||||||||||||||||||| |||||||||||||| || | | | | ||| Sbjct 67 TCGTGTTTGCAGAGTGCTGTGTTTTTATTAAACAGTCGCAGCCACCAGTTTATTGCAACC 126 Query 301 GGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACG 360 ||| || || || || | |||||||||||||||||||||||| Sbjct 127 --------CTTTCG--------CCCTC-CCAAAAAGGGCGCACCTTCTCCCGAAGTTACG 169 Query 361 GTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTC 415 |||| ||||||||||||||||| |||||||||||||||||||||| | |||||| Sbjct 170 GTGCTATTTTGCCTAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTAGAATTCTC 224 >seq23817 Length=2840 Score = 194 bits (214), Expect = 4e-47 Identities = 174/216 (81%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 202 TCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTG 261 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 987 TCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTG 1046 Query 262 TTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACGGAGCAAG 321 |||||| |||||||||||||| || | | | | ||| | || || || || Sbjct 1047 TTTTTATTAAACAGTCGCAGCCACCAGTTTATTGCAACCCTTTCGCCCTCACACAGTAAA 1106 Query 322 TCCTTCACCCTCACC--GGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTC 379 ||| || ||| |||| ||||| ||||||||||||||| || |||||| ||||| Sbjct 1107 GTGATCAAGCT-ACCGGGGCGTACCTTTTCCCGAAGTTACGGTACCAATTTGCCGAGTTC 1165 Query 380 CTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTC 415 |||| |||||||||||||||||||||| | || ||| Sbjct 1166 CTTCTCCCGAGTTCTCTCAAGCGCCTTAGAATACTC 1201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260499690048