Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09]
23,819 sequences; 2,301,379,344 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq125 214 3e-53
seq22515 187 4e-45
seq19044 134 2e-29
seq195 95.1 2e-17
seq51 95.1 2e-17
seq134 82.4 1e-13
>seq125
Length=3337254
Score = 214 bits (236), Expect = 3e-53
Identities = 201/250 (80%), Gaps = 11/250 (4%)
Strand=Plus/Plus
Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75
|||||| |||||| || |||| | |||||||||||||||||||| |||||||||| ||
Sbjct 24044 TCAGTGCAGCGCGTGTA--GCCCCGGACATCTAAGGGCATCACAGATCTGTTATTGC-TC 24100
Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-TA 131
|| || | |||||| | |||| | |||||||||| ||| | |||| ||| |
Sbjct 24101 AATCT-CGGGTGGCTGAATGCCACTTGTCCCTCTAAAAAGTTGGGGGACACCGACCGCTC 24159
Query 132 GTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188
| | | | | ||| |||||| | | ||||||||| ||||||||||||||||||||
Sbjct 24160 GGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCATTATCGGAATTAACCAGACA 24219
Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248
||| |||||||||||||||||| |||||||||||||||||| |||||| |||||||||||
Sbjct 24220 AATAACTCCACCAACTAAGAACAGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTA 24279
Query 249 TCAATCTGTC 258
||||||||||
Sbjct 24280 TCAATCTGTC 24289
>seq22515
Length=1729
Score = 187 bits (206), Expect = 4e-45
Identities = 200/264 (76%), Gaps = 28/264 (11%)
Strand=Plus/Plus
Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 336 TCAGTGTAGCGCGCGTGCGGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 394
Query 76 AAACTTCCATTGGCTGGAA--GCCAATAGTCCCTCTAAGAAGCCA------------GCC 121
|| || || ||| | || | ||||||||||||| | |||
Sbjct 395 AATCT-CCTGCAGCTATACATGCTGCTCATCCCTCTAAGAAGATATTATTGGACGCGGCC 453
Query 122 A-------CCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCG 174
| | || || ||| | ||| |||| ||| | ||||||||||||| ||
Sbjct 454 ATATGCACCAAAACAACGTCCA-----CTAGTTAGTAGGCCAGAGTCTCGTTCGTTACCG 508
Query 175 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 234
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 509 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCATCCACCAAA 568
Query 235 TCAAGAAAGAGCTATCAATCTGTC 258
|| |||||||||| | | ||||||
Sbjct 569 TCGAGAAAGAGCTCTTATTCTGTC 592
>seq19044
Length=2450392
Score = 134 bits (148), Expect = 2e-29
Identities = 80/84 (95%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 175 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 234
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 2385816 GAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAA 2385757
Query 235 TCAAGAAAGAGCTATCAATCTGTC 258
|| |||||||||||||||||||||
Sbjct 2385756 TCGAGAAAGAGCTATCAATCTGTC 2385733
Score = 123 bits (136), Expect = 4e-26
Identities = 139/181 (77%), Gaps = 9/181 (5%)
Strand=Plus/Minus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
|||||| |||| ||||||| |||| | |||||||||||||||||||||||||||||| ||
Sbjct 2386088 GTCAGTTTAGCACGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 2386030
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA---GCCAGCCACCAACCA-T 130
||| | || |||||| | |||| | ||||||||||||| | | |||| |||| |
Sbjct 2386029 CAATC-TCTGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACACCGACCACT 2385971
Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187
| | | | | ||| |||||| | | ||||| || |||||| |||||||||||||
Sbjct 2385970 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCATTTGTTATCAGAATTAACCAGAC 2385911
Query 188 A 188
|
Sbjct 2385910 A 2385910
>seq195
Length=1051314
Score = 95.1 bits (104), Expect = 2e-17
Identities = 87/110 (79%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| | | || | |||| |||| |||||||||||| ||||| |||||||
Sbjct 737770 CTAGTTAGCATGCCAGAGTTTTGTTCATTATAGGAATTAACCAGGCAAATTACTCCACTG 737711
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251
| ||||||| |||||||||||||| || ||||| ||||||||| |||
Sbjct 737710 AATAAGAACAGCCATGCACCACCATGCACAGAATTGGGAAAGAGCTTTCA 737661
>seq51
Length=29663373
Score = 95.1 bits (104), Expect = 2e-17
Identities = 83/101 (82%), Gaps = 2/101 (2%)
Strand=Plus/Minus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
|||||||||||||| || | |||| | ||||||| |||||||||||||||||||||| ||
Sbjct 26250986 GTCAGTGTAGCGCGAGTACAGCCCTGGACATCTACGGGCATCACAGACCTGTTATTG-CT 26250928
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115
||| | || |||| | |||| | ||||||||||||||
Sbjct 26250927 CAATC-TCAGGCGGCTAAATGCCACTTGTCCCTCTAAGAAG 26250888
>seq134
Length=17875762
Score = 82.4 bits (90), Expect = 1e-13
Identities = 48/50 (96%), Gaps = 0/50 (0%)
Strand=Plus/Minus
Query 172 TCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACC 221
||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 9031532 TCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCTCC 9031483
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796616141139
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |