Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq125 214 3e-53 seq22515 187 4e-45 seq19044 134 2e-29 seq195 95.1 2e-17 seq51 95.1 2e-17 seq134 82.4 1e-13 >seq125 Length=3337254 Score = 214 bits (236), Expect = 3e-53 Identities = 201/250 (80%), Gaps = 11/250 (4%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||| |||||| || |||| | |||||||||||||||||||| |||||||||| || Sbjct 24044 TCAGTGCAGCGCGTGTA--GCCCCGGACATCTAAGGGCATCACAGATCTGTTATTGC-TC 24100 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-TA 131 || || | |||||| | |||| | |||||||||| ||| | |||| ||| | Sbjct 24101 AATCT-CGGGTGGCTGAATGCCACTTGTCCCTCTAAAAAGTTGGGGGACACCGACCGCTC 24159 Query 132 GTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 | | | | | ||| |||||| | | ||||||||| |||||||||||||||||||| Sbjct 24160 GGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCATTATCGGAATTAACCAGACA 24219 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 ||| |||||||||||||||||| |||||||||||||||||| |||||| ||||||||||| Sbjct 24220 AATAACTCCACCAACTAAGAACAGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTA 24279 Query 249 TCAATCTGTC 258 |||||||||| Sbjct 24280 TCAATCTGTC 24289 >seq22515 Length=1729 Score = 187 bits (206), Expect = 4e-45 Identities = 200/264 (76%), Gaps = 28/264 (11%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || Sbjct 336 TCAGTGTAGCGCGCGTGCGGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 394 Query 76 AAACTTCCATTGGCTGGAA--GCCAATAGTCCCTCTAAGAAGCCA------------GCC 121 || || || ||| | || | ||||||||||||| | ||| Sbjct 395 AATCT-CCTGCAGCTATACATGCTGCTCATCCCTCTAAGAAGATATTATTGGACGCGGCC 453 Query 122 A-------CCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCG 174 | | || || ||| | ||| |||| ||| | ||||||||||||| || Sbjct 454 ATATGCACCAAAACAACGTCCA-----CTAGTTAGTAGGCCAGAGTCTCGTTCGTTACCG 508 Query 175 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 234 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 509 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCATCCACCAAA 568 Query 235 TCAAGAAAGAGCTATCAATCTGTC 258 || |||||||||| | | |||||| Sbjct 569 TCGAGAAAGAGCTCTTATTCTGTC 592 >seq19044 Length=2450392 Score = 134 bits (148), Expect = 2e-29 Identities = 80/84 (95%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 175 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 234 |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 2385816 GAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAA 2385757 Query 235 TCAAGAAAGAGCTATCAATCTGTC 258 || ||||||||||||||||||||| Sbjct 2385756 TCGAGAAAGAGCTATCAATCTGTC 2385733 Score = 123 bits (136), Expect = 4e-26 Identities = 139/181 (77%), Gaps = 9/181 (5%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||| |||| ||||||| |||| | |||||||||||||||||||||||||||||| || Sbjct 2386088 GTCAGTTTAGCACGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 2386030 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA---GCCAGCCACCAACCA-T 130 ||| | || |||||| | |||| | ||||||||||||| | | |||| |||| | Sbjct 2386029 CAATC-TCTGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACACCGACCACT 2385971 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||| || |||||| ||||||||||||| Sbjct 2385970 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCATTTGTTATCAGAATTAACCAGAC 2385911 Query 188 A 188 | Sbjct 2385910 A 2385910 >seq195 Length=1051314 Score = 95.1 bits (104), Expect = 2e-17 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | || | |||| |||| |||||||||||| ||||| ||||||| Sbjct 737770 CTAGTTAGCATGCCAGAGTTTTGTTCATTATAGGAATTAACCAGGCAAATTACTCCACTG 737711 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 | ||||||| |||||||||||||| || ||||| ||||||||| ||| Sbjct 737710 AATAAGAACAGCCATGCACCACCATGCACAGAATTGGGAAAGAGCTTTCA 737661 >seq51 Length=29663373 Score = 95.1 bits (104), Expect = 2e-17 Identities = 83/101 (82%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||||||| || | |||| | ||||||| |||||||||||||||||||||| || Sbjct 26250986 GTCAGTGTAGCGCGAGTACAGCCCTGGACATCTACGGGCATCACAGACCTGTTATTG-CT 26250928 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||| | || |||| | |||| | |||||||||||||| Sbjct 26250927 CAATC-TCAGGCGGCTAAATGCCACTTGTCCCTCTAAGAAG 26250888 >seq134 Length=17875762 Score = 82.4 bits (90), Expect = 1e-13 Identities = 48/50 (96%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 172 TCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACC 221 ||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct 9031532 TCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCTCC 9031483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796616141139