Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq125 333 5e-89 seq19044 322 8e-86 seq21327 320 3e-85 seq21159 300 3e-79 seq267 197 2e-48 seq222 185 1e-44 >seq125 Length=3337254 Score = 333 bits (368), Expect = 5e-89 Identities = 251/294 (85%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 16547 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 16606 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 16607 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 16666 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| ||||||||||||||| |||||| ||||||||||||| ||||||||| Sbjct 16667 AATTCTGCTTCACAATGATAGGAAGAGCCAACATCGGAGGATCAAAAAGCGACGTCGCTA 16726 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 ||||||||||| |||||||||||||||||||||||||||||||||| |||||| || Sbjct 16727 CGAACGCTTGGCCACCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 16786 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| |||| | |||||| | ||||| |||||||| ||| ||||||| Sbjct 16787 TAAAACCCAAAGGGTCAGAAGGATTGTGAGGCCCCACTTTCACGGTCTGTATTC 16840 >seq19044 Length=2450392 Score = 322 bits (356), Expect = 8e-86 Identities = 249/295 (84%), Gaps = 1/295 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | || || |||||| |||||||||||||||||||||| Sbjct 2393206 TACTGAGCAGGATTACCATGGCAGCAACACATCATCAATAGGGTAAAACTAACCTGTCTC 2393147 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||| ||||||||||||||||||||||||| ||||||| | Sbjct 2393146 ACGACGGTCTAAACCCAGCTCATGTTCCCTATTAGTGGGTGAACAATCTAACGCTTGGTG 2393087 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2393086 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 2393027 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 | || || |||| ||||||||||||||||||||| ||||||||||||| |||||| || Sbjct 2393026 TCAATGCCTGGCCGCCACAAGCCAGTTATCCCTGAGGTAACTTTTCTGACACCTCCTGCT 2392967 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | ||| | || | |||||||| ||||| | |||||| ||| ||||| || Sbjct 2392966 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATGCA 2392912 >seq21327 Length=701659 Score = 320 bits (354), Expect = 3e-85 Identities = 248/294 (84%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 692828 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 692769 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||| |||||||| |||||||||||||||||||||||| | Sbjct 692768 ACGACGGTCTAAACCCAGCTCATGTTCCCTACTAGTGGGTGAACAATCCAACGCTTGGTG 692709 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 692708 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGTGATGTCGCTA 692649 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 ||||||||||| |||||||||||||||||||||||| |||||||||| |||||| || Sbjct 692648 CGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGAAACTTTTCTGACACCTCCTGCT 692589 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| |||| | |||||||| ||||| || ||||| ||| ||| ||| Sbjct 692588 TAAAACCCAAAGGGTCAGAAGGATCGTGAGGCCCCAATTTCACGGTCTGTTTTC 692535 >seq21159 Length=1127 Score = 300 bits (332), Expect = 3e-79 Identities = 218/252 (87%), Gaps = 3/252 (1%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 || ||||||||||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 378 CAACAGTAGGGTAAAACTAACCTGTCTCGCGACGGTCTAAACCCAGCTCACGTTCCCTTT 319 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 | |||||||||||||||||||| | ||||||||| |||||||||||||||||| Sbjct 318 TGACGGGTGAACAATCCAACGCTTTGTAATTTCTGCTTCACAATGATAGGAAGAGCCGAC 259 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 258 ATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCC 199 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA---TTTCGAGGGACTAAAGGATCGATA 268 |||||||||||||||| ||||||| || | ||| || | || | |||||||||||| Sbjct 198 TGTGGTAACTTTTCTGACACCTCTTGCTTAAAACTCTTAAAAAGGTCAAAAGGATCGATA 139 Query 269 GGCCACACTTTC 280 | || ||||| Sbjct 138 GACCGTGCTTTC 127 >seq267 Length=13021217 Score = 197 bits (218), Expect = 2e-48 Identities = 174/216 (81%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 79 TCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGAT 138 ||||||||||||||||||||| |||||||||| |||| |||||||| ||| ||||| Sbjct 5609419 TCACGTTCCCTATTAGTGGGTAAACAATCCAATGCTTGGTGAATTCTGTTTCAAAATGAT 5609478 Query 139 AGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACA 198 || || || |||||||||||||||||||||||| || ||||||| ||||||| |||||| Sbjct 5609479 AGTAAT-GCGGACATCGAAGGATCAAAAAGCAACATCACTATGAATGCTTGGCCGCCACA 5609537 Query 199 AGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAA 258 |||||||||||||||||| |||||||||| |||||| || | ||| | || | | Sbjct 5609538 AGCCAGTTATCCCTGTGGCAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGA 5609597 Query 259 AGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 ||||| | ||| | |||||| || |||||||| Sbjct 5609598 AGGATTGTGAGGTCCTGCTTTCACAGTCTGTATTCA 5609633 >seq222 Length=14049273 Score = 185 bits (204), Expect = 1e-44 Identities = 183/235 (78%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||||||| | |||||||| | | || | ||||||| |||||||||||||| || Sbjct 2815808 TACTAAGCAGGATTACCATGGCAACAACACATTATCAGTAAGGTAAAACTAACCTATCCT 2815749 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 |||| ||||||| |||||||||| || |||||||||| |||||||| | || | | Sbjct 2815748 ATGATGGTCTAATCCCAGCTCACCTTGCCTATTAGTGAATGAACAATTTGATGCCTGGTG 2815689 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| ||||| |||| || | ||||| ||||||| |||||| | | |||| Sbjct 2815688 AATTCTGCTTCACAATGATGGGAACAGACAACATCAAAGGATCCTAAAGCAGCATTGCTA 2815629 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 |||| ||||||| |||||||||| ||||| | |||||||||||| |||||| Sbjct 2815628 TGAATGCTTGGCCATCACAAGCCAGCTATCC---TCGTAACTTTTCTGACACCTC 2815577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854196490464