Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09]
23,819 sequences; 2,301,379,344 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq125 333 5e-89
seq19044 322 8e-86
seq21327 320 3e-85
seq21159 300 3e-79
seq267 197 2e-48
seq222 185 1e-44
>seq125
Length=3337254
Score = 333 bits (368), Expect = 5e-89
Identities = 251/294 (85%), Gaps = 1/294 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | |||||||| | | || |||||||||||||||||||||||||||||
Sbjct 16547 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 16606
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 16607 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 16666
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
||||||||||| ||||||||||||||| |||||| ||||||||||||| |||||||||
Sbjct 16667 AATTCTGCTTCACAATGATAGGAAGAGCCAACATCGGAGGATCAAAAAGCGACGTCGCTA 16726
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239
||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 16727 CGAACGCTTGGCCACCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 16786
Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
| ||| |||| | |||||| | ||||| |||||||| ||| |||||||
Sbjct 16787 TAAAACCCAAAGGGTCAGAAGGATTGTGAGGCCCCACTTTCACGGTCTGTATTC 16840
>seq19044
Length=2450392
Score = 322 bits (356), Expect = 8e-86
Identities = 249/295 (84%), Gaps = 1/295 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | |||||||| | || || |||||| ||||||||||||||||||||||
Sbjct 2393206 TACTGAGCAGGATTACCATGGCAGCAACACATCATCAATAGGGTAAAACTAACCTGTCTC 2393147
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
Sbjct 2393146 ACGACGGTCTAAACCCAGCTCATGTTCCCTATTAGTGGGTGAACAATCTAACGCTTGGTG 2393087
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2393086 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 2393027
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239
| || || |||| ||||||||||||||||||||| ||||||||||||| |||||| ||
Sbjct 2393026 TCAATGCCTGGCCGCCACAAGCCAGTTATCCCTGAGGTAACTTTTCTGACACCTCCTGCT 2392967
Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294
| ||| | || | |||||||| ||||| | |||||| ||| ||||| ||
Sbjct 2392966 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATGCA 2392912
>seq21327
Length=701659
Score = 320 bits (354), Expect = 3e-85
Identities = 248/294 (84%), Gaps = 1/294 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | |||||||| | | || |||||||||||||||||||||||||||||
Sbjct 692828 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 692769
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| |||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
Sbjct 692768 ACGACGGTCTAAACCCAGCTCATGTTCCCTACTAGTGGGTGAACAATCCAACGCTTGGTG 692709
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 692708 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGTGATGTCGCTA 692649
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239
||||||||||| |||||||||||||||||||||||| |||||||||| |||||| ||
Sbjct 692648 CGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGAAACTTTTCTGACACCTCCTGCT 692589
Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
| ||| |||| | |||||||| ||||| || ||||| ||| ||| |||
Sbjct 692588 TAAAACCCAAAGGGTCAGAAGGATCGTGAGGCCCCAATTTCACGGTCTGTTTTC 692535
>seq21159
Length=1127
Score = 300 bits (332), Expect = 3e-79
Identities = 218/252 (87%), Gaps = 3/252 (1%)
Strand=Plus/Minus
Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 378 CAACAGTAGGGTAAAACTAACCTGTCTCGCGACGGTCTAAACCCAGCTCACGTTCCCTTT 319
Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151
| |||||||||||||||||||| | ||||||||| ||||||||||||||||||
Sbjct 318 TGACGGGTGAACAATCCAACGCTTTGTAATTTCTGCTTCACAATGATAGGAAGAGCCGAC 259
Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 258 ATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCC 199
Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA---TTTCGAGGGACTAAAGGATCGATA 268
|||||||||||||||| ||||||| || | ||| || | || | ||||||||||||
Sbjct 198 TGTGGTAACTTTTCTGACACCTCTTGCTTAAAACTCTTAAAAAGGTCAAAAGGATCGATA 139
Query 269 GGCCACACTTTC 280
| || |||||
Sbjct 138 GACCGTGCTTTC 127
>seq267
Length=13021217
Score = 197 bits (218), Expect = 2e-48
Identities = 174/216 (81%), Gaps = 1/216 (0%)
Strand=Plus/Plus
Query 79 TCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGAT 138
||||||||||||||||||||| |||||||||| |||| |||||||| ||| |||||
Sbjct 5609419 TCACGTTCCCTATTAGTGGGTAAACAATCCAATGCTTGGTGAATTCTGTTTCAAAATGAT 5609478
Query 139 AGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACA 198
|| || || |||||||||||||||||||||||| || ||||||| ||||||| ||||||
Sbjct 5609479 AGTAAT-GCGGACATCGAAGGATCAAAAAGCAACATCACTATGAATGCTTGGCCGCCACA 5609537
Query 199 AGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAA 258
|||||||||||||||||| |||||||||| |||||| || | ||| | || | |
Sbjct 5609538 AGCCAGTTATCCCTGTGGCAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGA 5609597
Query 259 AGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294
||||| | ||| | |||||| || ||||||||
Sbjct 5609598 AGGATTGTGAGGTCCTGCTTTCACAGTCTGTATTCA 5609633
>seq222
Length=14049273
Score = 185 bits (204), Expect = 1e-44
Identities = 183/235 (78%), Gaps = 4/235 (2%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||||||| | |||||||| | | || | ||||||| |||||||||||||| ||
Sbjct 2815808 TACTAAGCAGGATTACCATGGCAACAACACATTATCAGTAAGGTAAAACTAACCTATCCT 2815749
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
|||| ||||||| |||||||||| || |||||||||| |||||||| | || | |
Sbjct 2815748 ATGATGGTCTAATCCCAGCTCACCTTGCCTATTAGTGAATGAACAATTTGATGCCTGGTG 2815689
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
||||||||||| ||||| |||| || | ||||| ||||||| |||||| | | ||||
Sbjct 2815688 AATTCTGCTTCACAATGATGGGAACAGACAACATCAAAGGATCCTAAAGCAGCATTGCTA 2815629
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234
|||| ||||||| |||||||||| ||||| | |||||||||||| ||||||
Sbjct 2815628 TGAATGCTTGGCCATCACAAGCCAGCTATCC---TCGTAACTTTTCTGACACCTC 2815577
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854196490464
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |