Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq23818 724 0.0 seq23817 338 2e-90 >seq23818 Length=1185 Score = 724 bits (802), Expect = 0.0 Identities = 522/599 (87%), Gaps = 14/599 (2%) Strand=Plus/Plus Query 1 TCGACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCG 60 ||||||||| | |||| || ||||||||||||| ||| ||||||||||| |||||||||| Sbjct 181 TCGACTACGAACCTTA-TCGCCCGCAGTCTCACTGCCACGCTCTCACTTACCGGCATTCG 239 Query 61 GAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGTGCTCTACCTCCG 120 |||||||| ||| || |||| |||||||| ||| ||| ||||||||||||| Sbjct 240 GAGTTTGGCTGACGTCAGTAACCTTGTGGGGCCC-------ATC---TGCTCTACCTCCG 289 Query 121 GGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGT 180 | |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 290 GCAAGAAACACGTGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACCGAGT 349 Query 181 TTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTT 240 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 350 TTGATTGGCCTTTCACCCCTACCCACAGCTCATCCCCTCAGTTTTCAACCTAAGTGGGTT 409 Query 241 CGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTC 300 |||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||| Sbjct 410 CGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGGCCATGGGTAGATCACTCGGCTTC 469 Query 301 GGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCA 360 |||||| | | || ||||| ||||||| ||||||||||||||||||||||||||||| Sbjct 470 GGGTCTAGGGCACGCGACTCAAACGCCCTGTTCGGACTCGCTTTCGCTACGGCTACCCCC 529 Query 361 CACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCG 420 |||||||||| ||| || | | | ||||||||||||||||||||||||||||||| Sbjct 530 CACGGGTTAA--ACGCCACGTACCACTAACTCGCAGGCTCATTCTTCAAAAGGCACGCAA 587 Query 421 TCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTA 480 ||||| | || |||| ||| |||| |||| ||||||||||| ||||||||||| Sbjct 588 TCACCCCG-CCCCCGAAGGAACTAAGGCTCTCACGGCTTGTAGGCACACGGTTTCAGGTA 646 Query 481 CTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATC 540 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 647 CTATTTCACTCCCCTCCCGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATC 706 Query 541 GGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 |||||||| |||||| ||||||| |||||||||||||||||||||||| ||||||| Sbjct 707 GGTCACCAGTCAGTATTCAGGCTTAGCGGGTGGTCCCGCCAGATTCACACCGAATTTCA 765 >seq23817 Length=2840 Score = 338 bits (374), Expect = 2e-90 Identities = 352/457 (77%), Gaps = 15/457 (3%) Strand=Plus/Plus Query 142 ACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTA 201 |||||||| |||||| ||||||||||||| | | ||||| || |||||||||||||| Sbjct 1984 ACCTAAATAGTTTTCGGAGAGAACCAGCTATTTCCAGGTTTGTTTAGCCTTTCACCCCTA 2043 Query 202 TCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTAC 261 |||||| ||||||||| | |||||||| | ||||||||||| |||||| | || |||| Sbjct 2044 CCCACAGCTCATCCCCTAATTTTTCAACATTAGTGGGTTCGGACCTCCAGGGCGTGTTAC 2103 Query 262 CCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCA 321 | ||||| |||| |||||| |||||||| | | ||||||||| | | || ||| Sbjct 2104 CGCACCTTCATCCTGGCCATGGGTAGATCACCTGGTTTCGGGTCTACACCCAGCGACT-- 2161 Query 322 TACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACAC 381 |||||| |||||||||| |||| |||||||| ||| | | |||||||||||| || Sbjct 2162 GTCGCCCTGTTCGGACTCGATTTCTCTACGGCTCCCCTATTC-GGTTAACCTCGCCACTG 2220 Query 382 AACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCA 441 || | || |||| | | |||| | ||||||| |||||||||| || || ||| Sbjct 2221 AATG-TAAGTCGCTGACCCATTATACAAAAGGTACGCCGTCAC--GGAAC----AAG--- 2270 Query 442 CTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGG 501 || |||||||| | ||||| ||||| ||||||||| |||||||||||||| || ||| Sbjct 2271 --TCCGCTCCGACTGTTTGTATGCACACGGTTTCAGGATCTATTTCACTCCCCTCCCGGG 2328 Query 502 GTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGG 561 || |||||| |||||||||||||||||| || | ||||||||| || ||||||||| Sbjct 2329 GTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGGTCAGTAGTATTTAGC 2388 Query 562 CTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTC 598 ||| || ||||||| ||| |||| || ||||| Sbjct 2389 CTTGGAGGATGGTCCCCCCATGTTCAGACAGGATTTC 2425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817167065856