Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq23817 426 4e-117 seq23818 232 2e-58 >seq23817 Length=2840 Score = 426 bits (472), Expect = 4e-117 Identities = 350/410 (85%), Gaps = 12/410 (3%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 |||||| |||| || |||| ||||||||| |||| ||||||| ||||||| || ||| Sbjct 2045 CCACAGCTCATCCC-CTAA-TTTTTCAACATTAGTGGGTTCGGACCTCCAGGGCGT-GTT 2101 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| ||||| || |||| |||| || |||||| || ||||| |||||||| |||||| Sbjct 2102 ACCGCACCTT-CATCCTGGCCATGGG-TAGATCACCTGGTTT-CGGGTCTACA-CCCAGC 2157 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTTG 188 |||| | |||||| | |||||| ||| | ||||| ||||||||||||||||| || | Sbjct 2158 GACT-GTCGCCCTGTTCGGACTCGATTT-CTCTACGGCTCCCCTATTCGGTTAACCTC-G 2214 Query 189 CCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGG 248 |||||||| |||||||||||||||||||||||||||||||| ||||| ||||| || Sbjct 2215 CCACTGAATGTAAGTCGCTGACCCATTATACAAAAGGTACGCCGTCACGGAACAA-GTCC 2273 Query 249 GCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTC 308 ||||| |||| ||||| ||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 2274 GCTCCGACTGTTTGTATGCACACGGTTTCAGGATCTATTTCACTCCCCTC-CCGGGGTTC 2332 Query 309 TTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTG 368 |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 2333 TTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGGTCAGTAGTATTTAGCCTTG 2392 Query 369 GAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 ||||||||||||||||| |||||||| ||||||||| ||| |||||| Sbjct 2393 GAGGATGGTCCCCCCATGTTCAGACAGGATTTCTCGTGTCCCGCCCTACT 2442 >seq23818 Length=1185 Score = 232 bits (256), Expect = 2e-58 Identities = 317/423 (75%), Gaps = 26/423 (6%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 |||||| |||| || || | |||| |||| ||| |||||||||||||| || || Sbjct 372 CCACAGCTCATCCC-CTCAGTTTT-CAACCTAAGTGGGTTCGGTCCTCCACGCGGTC-TT 428 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||| ||| ||||||| |||| || |||||| | ||| || |||||||| | | || Sbjct 429 ACCCGCGCTT-CAACCTGGCCATGGG-TAGATCACTCGGCTT-CGGGTCTAGGGCAC-GC 484 Query 129 GACT-AGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGG-TTAAGCTT 186 |||| | ||||||| | |||||||||| ||||||| || ||| ||| |||| | Sbjct 485 GACTCAAACGCCCTGTTCGGACTCGCTTT-CGCTACGGCTACCCCCCACGGGTTAAAC-- 541 Query 187 TGCCACTGAAAA-TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCC------- 238 ||||| | | ||| |||| | | |||| | ||||||| ||||| |||||| Sbjct 542 -GCCACGTACCACTAACTCGCAGGCTCATTCTTCAAAAGGCACGCAATCACCCCGCCCCC 600 Query 239 -AACAAAGTG-GGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCC 296 || || | ||||| ||| ||||||| ||| ||||||||||| |||||||||||||| Sbjct 601 GAAGGAACTAAGGCTCTCACGGCTTGTAGGCACACGGTTTCAGGTACTATTTCACTCCCC 660 Query 297 TCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGT-A 355 || ||||||| |||||| |||||||||||||||||| || | |||||||||| |||| | Sbjct 661 TC-CCGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCA-CCAGTCA 718 Query 356 GTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCT 415 ||||| || ||| | || ||||||| ||| ||||| || | |||| || |||| || || Sbjct 719 GTATTCAGGCTTAGCGGGTGGTCCCGCCAGATTCACACCGAATTTCACGGGCTCGGTGCT 778 Query 416 ACT 418 ||| Sbjct 779 ACT 781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241304263296