Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq22515 91.5 9e-17 seq19044 77.0 2e-12 seq125 77.0 2e-12 >seq22515 Length=1729 Score = 91.5 bits (100), Expect = 9e-17 Identities = 75/86 (87%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| |||| || ||||||||| ||||||||||| |||||||||| Sbjct 131 TCCGAAGGC-CTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 187 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 ||||||||| |||| ||||||||||| Sbjct 188 GGCAGGGACTTAAT-CAACGCAAGCT 212 >seq19044 Length=2450392 Score = 77.0 bits (84), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| |||| | |||| ||||||||||||||||||| Sbjct 2386286 CTCACTAAACCATG-CAATCGGTAGTA-GCGATGAGCGGTGTGTACAAAGGGCAGGGACT 2386229 Query 109 TAATACAACGCAAGCT 124 |||| |||| |||||| Sbjct 2386228 TAAT-CAACACAAGCT 2386214 >seq125 Length=3337254 Score = 77.0 bits (84), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| ||| ||||||| | |||| |||| ||||||||||||||||||| Sbjct 23845 CTCACTAAACCATCCAATT-GGTAGTA-GTGACGTGCGGTGTGTACAAAGGGCAGGGACT 23902 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 23903 TAAT-CAACGCAAGCT 23917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300732830420