Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq125 87.8 2e-15 seq124 84.2 2e-14 seq19044 77.0 3e-12 >seq125 Length=3337254 Score = 87.8 bits (96), Expect = 2e-15 Identities = 127/176 (72%), Gaps = 5/176 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCAT 69 ||||||||||||||||||| | ||||||||| |||| ||| | |||| | | Sbjct 24780 TTTACTTTGAAAAAATTAGGGTGTTCAAAGCGGGCCCAAGCTGCCTGGATACCGCAGCTA 24721 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||| | ||||||||||||| ||||| | ||| | | |||| Sbjct 24720 GGAATAATGGAATAGGAC-CGTGGTTCTATTTTGTTGGTTT-TTGGAACTGAGGCCATGA 24663 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | | || | | |||| | ||||| | | | |||||||||||||||| Sbjct 24662 TTAAGAGGAATGGCCAGGGGCATTCGTATTACACCGCTAGAGGTGAAATTCTTGGA 24607 >seq124 Length=16471106 Score = 84.2 bits (92), Expect = 2e-14 Identities = 126/176 (72%), Gaps = 5/176 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCAT 69 ||||||||||||||||||||| ||||||||||| || || | |||| | | Sbjct 416359 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGACCCGAGCCGCCTGGATACCGCAGCTA 416300 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| |||| |||| | ||||||||||||| ||||| | ||| | | ||| Sbjct 416299 GGAATAATGGAATGGGAC-CGTGGTTCTATTTTGTTGGTTT-TCGGAACTGAGGCCATGG 416242 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | ||| || |||||| | ||||| | | |||||||||||||||| Sbjct 416241 TTAAGAGGGACAGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 416186 >seq19044 Length=2450392 Score = 77.0 bits (84), Expect = 3e-12 Identities = 124/175 (71%), Gaps = 4/175 (2%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC--TTTGCTCGAATACATTACCATG 70 ||||||||||||||||||| | ||||||||| |||| || | |||| | | | Sbjct 2385243 TTTACTTTGAAAAAATTAGGGTGTTCAAAGCCGGCCGAGCCGCCTGGATACTGCAGCTAG 2385302 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGAT 130 | ||||| ||||||||| || |||||||||| || ||||| | ||| | | |||| Sbjct 2385303 GGATAATGGAATAGGAC-TGTGGTTCTATTTGGTTGGTTT-TCGGAACTGAGGCCTTGAT 2385360 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | |||| | | |||| | ||||| | | |||||||||||||||| Sbjct 2385361 TAAGAGGGATGGCCAGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 2385415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511881857760