Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq22515 183 6e-44 seq19044 147 4e-33 seq125 145 1e-32 seq51 131 3e-28 >seq22515 Length=1729 Score = 183 bits (202), Expect = 6e-44 Identities = 199/260 (77%), Gaps = 8/260 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC---TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||||||| | | || | ||| | ||| | ||||| |||||||||||||| Sbjct 435 CTTCTTAGAGGGATGAGCAGCATGTATAGCTGCAGGA-GATTGAG-CAATAACAGGTCTG 378 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 |||||||||||||||| ||||||||||||||||||||||||| | | | || ||| Sbjct 377 TGATGCCCTTAGATGTCCTGGGCCGCACGCGCGCTACACTGAATGGGTTAGCGGGTTTT- 319 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 |||| ||| ||| ||| |||| || ||| | ||||| | ||||| | | | Sbjct 318 --CCTTCTCCGAGAGGAGCGGGAAATCGCGTGAAAACCATTCGTGATAGGGATTGGGGCT 261 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||| || | | | |||||||||| || ||||||||| ||||||||| ||||||| Sbjct 260 TGCAATTGTTCCCCATGAACGAGGAATTCCCAGTAAGCGCAAGTCATCAGCTTGCGTTGA 201 Query 309 TTACGTCCCTGCCCTTTGTA 328 ||| |||||||||||||||| Sbjct 200 TTAAGTCCCTGCCCTTTGTA 181 >seq19044 Length=2450392 Score = 147 bits (162), Expect = 4e-33 Identities = 192/259 (74%), Gaps = 5/259 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 2385990 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCAGA-GATTGAG-CAATAACAGGTCTGTG 2386047 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||| |||| |||||| | || | || | | Sbjct 2386048 ATGCCCTTAGATGTCCGGGGCTGCACGCGTGCTAAACTGACTGGCTCAGTGTGTGCCTAC 2386107 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGT-CGTGCTGGGGATAGAGCATT 249 || || ||| |||||| | ||| ||||| | |||| ||||||| | ||| Sbjct 2386108 CCAACAATGGCAGGCGCGGGTAACCC-GTTGAACTCCATTCGTGTTGGGGATCAGGGATT 2386166 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||||||| | | | ||| |||||| || | |||| | | ||||| ||| | |||||| Sbjct 2386167 GCAATTATTCCCCATGAACAAGGAATTCCCACTAAGTGAGGGTCATAAGCTTGTGTTGAT 2386226 Query 310 TACGTCCCTGCCCTTTGTA 328 || |||||||||||||||| Sbjct 2386227 TAAGTCCCTGCCCTTTGTA 2386245 >seq125 Length=3337254 Score = 145 bits (160), Expect = 1e-32 Identities = 190/258 (74%), Gaps = 5/258 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||| |||||||||| | ||| | |||| || | ||||| ||||||||| |||||| Sbjct 24139 CTTTTTAGAGGGACAAGTGGCATTCAGCCACCCGA-GATTGAG-CAATAACAGATCTGTG 24082 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||| | |||||| | || | || | | Sbjct 24081 ATGCCCTTAGATGTCCGGGGCTACACGCGC--TGCACTGATTGGCTCAGCATGTGCCTAC 24024 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || ||||| ||| ||||||| | | || | | ||||| ||||||| | |||| Sbjct 24023 ACTATGCCGGCAGGCTTGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCAGGGATTG 23964 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | ||| || ||||||| || || ||| || ||||| ||| ||||||||| Sbjct 23963 CAATTATTCCCCTTGAAAGAGGAATTCCCAGGAAGTGCAAGTCATAAGCTTGCGTTGATT 23904 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 23903 AAGTCCCTGCCCTTTGTA 23886 >seq51 Length=29663373 Score = 131 bits (144), Expect = 3e-28 Identities = 159/213 (75%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | ||||| || | ||||| |||||||||||||||| Sbjct 26250888 CTTCTTAGAGGGACAAGTGGCATTTAGCCGCCTGA-GATTGAG-CAATAACAGGTCTGTG 26250945 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||| ||||||| | |||| | || |||||||||||||| | || | | | | Sbjct 26250946 ATGCCCGTAGATGTCCAGGGCTGTACTCGCGCTACACTGACTGGCTCAGCATATGCCTAC 26251005 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| ||||| |||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 26251006 CCTTCGCCGGCAGGTGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATTGGGGATTG 26251065 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTA 283 ||| |||| | | | ||||||||||| | |||| Sbjct 26251066 CAAGTATTCCCCATGAACGAGGAATGTCAAGTA 26251098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946974386432