Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09]
23,819 sequences; 2,301,379,344 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq22515 183 6e-44
seq19044 147 4e-33
seq125 145 1e-32
seq51 131 3e-28
>seq22515
Length=1729
Score = 183 bits (202), Expect = 6e-44
Identities = 199/260 (77%), Gaps = 8/260 (3%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC---TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128
||||||||||||| | | || | ||| | ||| | ||||| ||||||||||||||
Sbjct 435 CTTCTTAGAGGGATGAGCAGCATGTATAGCTGCAGGA-GATTGAG-CAATAACAGGTCTG 378
Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188
|||||||||||||||| ||||||||||||||||||||||||| | | | || |||
Sbjct 377 TGATGCCCTTAGATGTCCTGGGCCGCACGCGCGCTACACTGAATGGGTTAGCGGGTTTT- 319
Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248
|||| ||| ||| ||| |||| || ||| | ||||| | ||||| | | |
Sbjct 318 --CCTTCTCCGAGAGGAGCGGGAAATCGCGTGAAAACCATTCGTGATAGGGATTGGGGCT 261
Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308
||||||| || | | | |||||||||| || ||||||||| ||||||||| |||||||
Sbjct 260 TGCAATTGTTCCCCATGAACGAGGAATTCCCAGTAAGCGCAAGTCATCAGCTTGCGTTGA 201
Query 309 TTACGTCCCTGCCCTTTGTA 328
||| ||||||||||||||||
Sbjct 200 TTAAGTCCCTGCCCTTTGTA 181
>seq19044
Length=2450392
Score = 147 bits (162), Expect = 4e-33
Identities = 192/259 (74%), Gaps = 5/259 (2%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| || | ||||| ||||||||||||||||
Sbjct 2385990 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCAGA-GATTGAG-CAATAACAGGTCTGTG 2386047
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| ||||||| |||| |||||| | || | || | |
Sbjct 2386048 ATGCCCTTAGATGTCCGGGGCTGCACGCGTGCTAAACTGACTGGCTCAGTGTGTGCCTAC 2386107
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGT-CGTGCTGGGGATAGAGCATT 249
|| || ||| |||||| | ||| ||||| | |||| ||||||| | |||
Sbjct 2386108 CCAACAATGGCAGGCGCGGGTAACCC-GTTGAACTCCATTCGTGTTGGGGATCAGGGATT 2386166
Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309
||||||||| | | | ||| |||||| || | |||| | | ||||| ||| | ||||||
Sbjct 2386167 GCAATTATTCCCCATGAACAAGGAATTCCCACTAAGTGAGGGTCATAAGCTTGTGTTGAT 2386226
Query 310 TACGTCCCTGCCCTTTGTA 328
|| ||||||||||||||||
Sbjct 2386227 TAAGTCCCTGCCCTTTGTA 2386245
>seq125
Length=3337254
Score = 145 bits (160), Expect = 1e-32
Identities = 190/258 (74%), Gaps = 5/258 (2%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
||| |||||||||| | ||| | |||| || | ||||| ||||||||| ||||||
Sbjct 24139 CTTTTTAGAGGGACAAGTGGCATTCAGCCACCCGA-GATTGAG-CAATAACAGATCTGTG 24082
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| ||||||| | |||||| | || | || | |
Sbjct 24081 ATGCCCTTAGATGTCCGGGGCTACACGCGC--TGCACTGATTGGCTCAGCATGTGCCTAC 24024
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
|| ||||| ||| ||||||| | | || | | ||||| ||||||| | ||||
Sbjct 24023 ACTATGCCGGCAGGCTTGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCAGGGATTG 23964
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
|||||||| | ||| || ||||||| || || ||| || ||||| ||| |||||||||
Sbjct 23963 CAATTATTCCCCTTGAAAGAGGAATTCCCAGGAAGTGCAAGTCATAAGCTTGCGTTGATT 23904
Query 311 ACGTCCCTGCCCTTTGTA 328
| ||||||||||||||||
Sbjct 23903 AAGTCCCTGCCCTTTGTA 23886
>seq51
Length=29663373
Score = 131 bits (144), Expect = 3e-28
Identities = 159/213 (75%), Gaps = 3/213 (1%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | ||||| || | ||||| ||||||||||||||||
Sbjct 26250888 CTTCTTAGAGGGACAAGTGGCATTTAGCCGCCTGA-GATTGAG-CAATAACAGGTCTGTG 26250945
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||| ||||||| | |||| | || |||||||||||||| | || | | | |
Sbjct 26250946 ATGCCCGTAGATGTCCAGGGCTGTACTCGCGCTACACTGACTGGCTCAGCATATGCCTAC 26251005
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
|||| ||||| |||| |||||| | | || | | ||||| ||||||| | | ||||
Sbjct 26251006 CCTTCGCCGGCAGGTGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATTGGGGATTG 26251065
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTA 283
||| |||| | | | ||||||||||| | ||||
Sbjct 26251066 CAAGTATTCCCCATGAACGAGGAATGTCAAGTA 26251098
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 946974386432
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |