Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq23817 383 6e-104 seq23818 253 7e-65 >seq23817 Length=2840 Score = 383 bits (424), Expect = 6e-104 Identities = 215/217 (99%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 1 TCGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 2181 TCGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAGGTGATCTACCCAT 2122 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2121 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 2062 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 2061 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACCTGGAAATAGCTGGTTCTC 2002 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCA 217 ||||||||||||||||||||||||||||||||||||| Sbjct 2001 TCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCA 1965 >seq23818 Length=1185 Score = 253 bits (280), Expect = 7e-65 Identities = 349/482 (72%), Gaps = 17/482 (4%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGAC--AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 ||||||||||||||||| |||||| | |||||||||| || ||||||||||||| Sbjct 509 CGAGTCCGAACAGGGCGTTTGAGTCGCGTGCCCTAGACCCGAAGCCGAGTGATCTACCCA 450 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 |||||||| ||||| ||||| || | |||||| ||||||||||| | |||||||| Sbjct 449 TGGCCAGGTTGAAGCGCGGGTAAGACCGCGTGGAGGACCGAACCCACTTAGGTTGAAAAC 390 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 | ||||||||||||||||||||||||||||||| || |||||| || |||||||||||| Sbjct 389 TGAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCCAATCAAACTCGGTGATAGCTGGTTCT 330 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC-CATCGGGGGTAGAGCACTGTTAT 238 | |||||| |||||||| || ||| || | | ||| ||||||||| || Sbjct 329 CCCCGAAATGCATTTAGGTGCAGCGTCACGTGTTTCTTGCCGGAGGTAGAGCA----GAT 274 Query 239 GGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTA 298 || | || | ||| || | | |||||||||||||| | ||| | Sbjct 273 GG---GCCCCACAAGGTTACTGACGTCAGC----CAAACTCCGAATGCCGGTAAGTGAGA 221 Query 299 CCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTA 358 || || |||||| ||| | |||||| ||| ||||||| || | || || | Sbjct 220 GCGTGGCAGTGAGACTGCGGGCGATAAGGTTCGTAGTCGAGAGGGAAACAGCCCAGATCA 161 Query 359 TCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAG 418 || ||||||||||| || | ||||||| || || || || | || ||||| Sbjct 160 TCGGCTAAGGCCCCTAAGCGTGTGCTAAGTGGAA--AAGGATGTGGAGTCGCAGAGACAA 103 Query 419 CTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCG 478 | |||| |||||||| |||||||||| | || ||||||||||||| |||||||| ||| Sbjct 102 CCAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTGAAAGAGTGCGTAATAGCTCACTGGTCA 44 Query 479 AG 480 || Sbjct 43 AG 42 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689197554176