Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09]
23,819 sequences; 2,301,379,344 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq125 473 4e-131
seq21327 426 5e-117
seq19044 426 5e-117
seq152 316 7e-84
seq291 259 2e-66
seq15 251 2e-64
seq92 215 2e-53
seq131 181 3e-43
seq198 156 1e-35
seq261 125 2e-26
>seq125
Length=3337254
Score = 473 bits (524), Expect = 4e-131
Identities = 283/297 (95%), Gaps = 0/297 (0%)
Strand=Plus/Plus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|||||||||||||||||||||||| ||| ||||| | | ||||||||||||||||||
Sbjct 17170 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAA 17229
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 17230 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGG 17289
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 17290 ATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATG 17349
Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 17350 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCA 17409
Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 17410 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 17466
Score = 113 bits (124), Expect = 1e-22
Identities = 89/107 (83%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||| |||
Sbjct 16874 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCATTACC 16933
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113
|||| |||| ||| ||||||||| ||||||||||||||| || ||||
Sbjct 16934 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTC 16980
>seq21327
Length=701659
Score = 426 bits (472), Expect = 5e-117
Identities = 271/294 (92%), Gaps = 0/294 (0%)
Strand=Plus/Minus
Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293
|| |||||||||||||||||||||||| ||| ||||| | | |||||||| ||||||
Sbjct 692206 CGCCTCCCACTTATTCTACACCTCTCAGGTCTCTTCACCGTGCCAGACTAGAGACAAGCT 692147
Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353
||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||
Sbjct 692146 CAACAGGGTCTTCTTTCCCCGCTGATTCCACCAAGTCTGTTCCCTTGGCTGTGGTTTCGC 692087
Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413
| |||||||| |||||| |||||||||||| || |||||||||||| |||||||||||||
Sbjct 692086 TGGATAGTAGGTAGGGAGAGTGGGAATCTCATTCATCCATTCATGCACGTCACTAATTAG 692027
Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692026 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 691967
Query 474 TGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCG 527
| |||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 691966 TCATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATTACATCGCG 691913
Score = 95.1 bits (104), Expect = 4e-17
Identities = 82/102 (80%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| ||||| || |||| ||||||| |||| |||| | |||||| |||||||| |||
Sbjct 692501 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGAACACCTGCATTACC 692442
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACA 108
|||| |||| || || |||||| ||||||||||||||| ||
Sbjct 692441 GTTTGACAGGCGTACCACCCCAGTCAAACTCCCCACCTGGCA 692400
>seq19044
Length=2450392
Score = 426 bits (472), Expect = 5e-117
Identities = 271/294 (92%), Gaps = 0/294 (0%)
Strand=Plus/Minus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|||||||||||||||||| ||||| ||| ||||| | | ||||||||||||||| ||
Sbjct 2392639 CTCCCACTTATTCTACACTTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTTAA 2392580
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
|||||||||||||| || |||||||| ||||||||||||||||||||||||||||||| |
Sbjct 2392579 CAGGGTCTTCTTTCTCCTCTGATTCCACCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGG 2392520
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2392519 ATAGTAGGTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 2392460
Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476
| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2392459 ATGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCAAGCCGTTTACCCGCGCTTCA 2392400
Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCA 530
||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2392399 TTGAACTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCACGTCA 2392346
Score = 80.6 bits (88), Expect = 9e-13
Identities = 82/107 (77%), Gaps = 4/107 (4%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| ||||| || |||| ||||||| |||| |||| | ||||||||||| ||| ||
Sbjct 2392880 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACTTGCATTGCA 2392821
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113
|||| |||| ||| | ||| || ||||||||||||| || ||||
Sbjct 2392820 GTTTGACAGGTGTACTGCC----CCGAACTCCCCACCTGGCACTGTC 2392778
>seq152
Length=13249639
Score = 316 bits (350), Expect = 7e-84
Identities = 223/255 (87%), Gaps = 0/255 (0%)
Strand=Plus/Minus
Query 239 CCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACA 298
|||||||||||||||||||||| ||| |||| | | ||||||||||||||||||||
Sbjct 6996613 CCCACTTATTCTACACCTCTCATGTCTCCTCACTGTGCCAGACTAGAGTCAAGCTCAACA 6996554
Query 299 GGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGAT 358
|||||||||||| | ||||||| |||||||| |||||||||||||||||| ||| |||
Sbjct 6996553 TCGTCTTCTTTCCCTGATGATTCCTCCAAGCCCATTCCCTTGGCTGTGGTTTTGCTGGAT 6996494
Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418
||||| |||||||||||||||||| ||| |||||||||||| ||| |||||||||||||
Sbjct 6996493 AGTAGGTAGGGACAGTGGGAATCTTGTTCATCCATTCATGCAGGTCGCTAATTAGATGAC 6996434
Query 419 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTT 478
||||||||||||| |||||||||||||||| |||||||| | ||||||| | ||| ||
Sbjct 6996433 GAGGCATTTGGCTGCCTTAAGAGAGTCATACTTACTCCCTGCATTTACCCACACTTCATT 6996374
Query 479 GAATTTCTTCACTTT 493
|||||||||||||||
Sbjct 6996373 GAATTTCTTCACTTT 6996359
>seq291
Length=2493095
Score = 259 bits (286), Expect = 2e-66
Identities = 189/218 (87%), Gaps = 5/218 (2%)
Strand=Plus/Minus
Query 323 GCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCT 382
||||| ||| |||||||| |||||||||| || |||||||| ||||||||||||||||||
Sbjct 2407115 GCCAAACCCATTCCCTTGTCTGTGGTTTCTCTGGATAGTAGGTAGGGACAGTGGGAATCT 2407056
Query 383 CGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGA 442
| || ||||||||||| || | |||||||||||||| ||||||||||||||||||||| |
Sbjct 2407055 CCTTCATCCATTCATGTGCATTACTAATTAGATGACCAGGCATTTGGCTACCTTAAGAAA 2406996
Query 443 GTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAG 502
|||||||||||| ||| |||||| || ||| |||| ||||||||||||||||||||
Sbjct 2406995 GTCATAGTTACT--TGCCATTTACCTGCACTTCACTGAACTTCTTCACTTTGACATTCAG 2406938
Query 503 AGCACTGGGCAGAAATCACATTGCGTC---AACATCAC 537
||||| ||||||||||||||| | ||| ||||||||
Sbjct 2406937 AGCACCGGGCAGAAATCACATCGAGTCAAGAACATCAC 2406900
>seq15
Length=41692901
Score = 251 bits (278), Expect = 2e-64
Identities = 224/284 (79%), Gaps = 26/284 (9%)
Strand=Plus/Plus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|||||||| || |||||||||||| ||| ||||| | | | ||||||||||||||||||
Sbjct 38478946 CTCCCACTCATCCTACACCTCTCATGTCCCTTCACCATGCCAGACTAGAGTCAAGCTCAA 38479005
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
||||||| ||||||| || |||||||||||| |||||| || |
Sbjct 38479006 CAGGGTCATCTTTCC------AT------------GTTCCCTTGGCTCTGGTTTTGCCGG 38479047
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
||||||| | |||||||||| |||| |||| || || ||||||||||||||
Sbjct 38479048 ATAGTAGGTTGGGACAGTGGAGATCTT--------ATTCCTGTGCATCACTAATTAGATG 38479099
Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476
|||||| |||||||| ||||||||||||||||||||||||| | ||||||| ||||
Sbjct 38479100 ACGAGGAATTTGGCTTCCTTAAGAGAGTCATAGTTACTCCCACGATTTACCCAGGCTTCA 38479159
Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520
||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 38479160 TTGAATTTCTTCACTTTGACATTTAGAGCACTGACCAGAAATCA 38479203
>seq92
Length=6016729
Score = 215 bits (238), Expect = 2e-53
Identities = 167/196 (85%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398
|||||||||| || || || ||||| |||||||||||||||| || || |||||||||||
Sbjct 4756217 TGGCTGTGGTATCTCTGGACAGTAGGTAGGGACAGTGGGAATTTCATTCATCCATTCATG 4756276
Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTT-AAGAGAGTCATAGTTACTCCC 457
| | ||| |||||||||||| ||| ||||||| ||||| || | |||||| |||||||||
Sbjct 4756277 CACATCATTAATTAGATGACAAGGTATTTGGCCACCTTAAAAAAAGTCATGGTTACTCCC 4756336
Query 458 GCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAA 517
|| ||||||| || | ||||||||||||| ||||||||||||| |||||||||||||
Sbjct 4756337 ACCTTTTACCCATGC-TCATTGAATTTCTTCATTTTGACATTCAGAACACTGGGCAGAAA 4756395
Query 518 TCACATTGCGTCAACA 533
|||||| || ||||||
Sbjct 4756396 TCACATGGCATCAACA 4756411
>seq131
Length=32902730
Score = 181 bits (200), Expect = 3e-43
Identities = 215/286 (75%), Gaps = 8/286 (3%)
Strand=Plus/Plus
Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTC-GGACTAGAGTCAAGCTCAA 296
||||||||| ||||||| || | ||| | ||| ||| || || ||| ||||
Sbjct 1566281 TCCCACTTAATCTACACTTCCTATGTCTCTGCACTGTGTCAGGTTTACAGTT----TCAA 1566336
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
||| ||||||||| || | || | | ||||| ||||||||||||||||||| ||
Sbjct 1566337 CAGAGTCTTCTTTGACCACAGAGTTTTCTAAGCCA-TTCCCTTGGCTGTGGTTTCATCAG 1566395
Query 357 ATAGTAGATAGGGACAGTGGGAA-TCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415
|| || | |||||||| || | || || | |||||||||| || || |||||||
Sbjct 1566396 TTAAGAGCGAAAGACAGTGGAAAGTATCATTCACCCATTCATGCATGTTCCTGATTAGAT 1566455
Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCC-GTTTACCCGCGCTT 474
| | ||||||||||||||||||||||||| |||||| ||| || ||||| | | ||||
Sbjct 1566456 GGTGGAGCATTTGGCTACCTTAAGAGAGTCACAGTTACACCCACCAGTTTATCTGGGCTT 1566515
Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520
|||||||||||||||||||||||||| |||| |||| | ||||
Sbjct 1566516 CAGTGAATTTCTTCACTTTGACATTCAGAACACTAGGCAAATATCA 1566561
>seq198
Length=19200852
Score = 156 bits (172), Expect = 1e-35
Identities = 180/236 (76%), Gaps = 11/236 (5%)
Strand=Plus/Plus
Query 286 GTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGT 345
|| ||||||| | |||||| || | |||||| ||||||| ||||| | ||||
Sbjct 17831518 GTTAAGCTCATCCAGGTCTTT----CCTGTTGATTCTGCCAAGCTAGTTCC-TGGGCTAC 17831572
Query 346 GGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 405
|| | || ||| ||| |||| ||| ||||||||| ||| |||||||||| || |||
Sbjct 17831573 ACTT-CACTGGATGCTAGGTAGGAACACTGGGAATCTTGTTCATCCATTCATAGGCATCA 17831631
Query 406 CTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTA 465
|| | |||||| |||| |||||||||| | |||| || || ||||||| | | ||
Sbjct 17831632 CTGTTCAGATGATGAGGGGTTTGGCTACCCTCAGAG-GT-ATGGTTACTCTCT---TATA 17831686
Query 466 CCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 521
||| ||||| |||||||||||| ||||||||||||||||| | |||||||| ||||
Sbjct 17831687 CCCTCGCTTCGTTGAATTTCTTTACTTTGACATTCAGAGCTCCGGGCAGAAGTCAC 17831742
>seq261
Length=13056691
Score = 125 bits (138), Expect = 2e-26
Identities = 123/162 (76%), Gaps = 14/162 (9%)
Strand=Plus/Minus
Query 239 CCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACA 298
||||||||||||| |||||||| | | ||| | | | || ||||||| ||||||||
Sbjct 9542350 CCCACTTATTCTATACCTCTCATGGCTCTTCCCTGTGCCAGAACAGAGTCAGGCTCAACA 9542291
Query 299 G--------------GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTG 344
| |||||||||||||| |||||||| ||||||| | ||||||||||
Sbjct 9542290 GGATCTGGCTCAACAGGTCTTCTTTCCCCACTGATTCCACCAAGCCTGGCCCCTTGGCTG 9542231
Query 345 TGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTT 386
||||||| || | |||||| |||||| ||||||||||| |||
Sbjct 9542230 TGGTTTCACTGGGTAGTAGGTAGGGATAGTGGGAATCTTGTT 9542189
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1634810511712
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