Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq125 473 4e-131 seq21327 426 5e-117 seq19044 426 5e-117 seq152 316 7e-84 seq291 259 2e-66 seq15 251 2e-64 seq92 215 2e-53 seq131 181 3e-43 seq198 156 1e-35 seq261 125 2e-26 >seq125 Length=3337254 Score = 473 bits (524), Expect = 4e-131 Identities = 283/297 (95%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| ||||| | | |||||||||||||||||| Sbjct 17170 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAA 17229 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 17230 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGG 17289 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 17290 ATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATG 17349 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17350 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCA 17409 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 17410 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 17466 Score = 113 bits (124), Expect = 1e-22 Identities = 89/107 (83%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||| ||| Sbjct 16874 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCATTACC 16933 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| |||| ||| ||||||||| ||||||||||||||| || |||| Sbjct 16934 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTC 16980 >seq21327 Length=701659 Score = 426 bits (472), Expect = 5e-117 Identities = 271/294 (92%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293 || |||||||||||||||||||||||| ||| ||||| | | |||||||| |||||| Sbjct 692206 CGCCTCCCACTTATTCTACACCTCTCAGGTCTCTTCACCGTGCCAGACTAGAGACAAGCT 692147 Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 ||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||| Sbjct 692146 CAACAGGGTCTTCTTTCCCCGCTGATTCCACCAAGTCTGTTCCCTTGGCTGTGGTTTCGC 692087 Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 | |||||||| |||||| |||||||||||| || |||||||||||| ||||||||||||| Sbjct 692086 TGGATAGTAGGTAGGGAGAGTGGGAATCTCATTCATCCATTCATGCACGTCACTAATTAG 692027 Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 692026 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 691967 Query 474 TGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCG 527 | |||||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 691966 TCATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATTACATCGCG 691913 Score = 95.1 bits (104), Expect = 4e-17 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | |||||| |||||||| ||| Sbjct 692501 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGAACACCTGCATTACC 692442 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACA 108 |||| |||| || || |||||| ||||||||||||||| || Sbjct 692441 GTTTGACAGGCGTACCACCCCAGTCAAACTCCCCACCTGGCA 692400 >seq19044 Length=2450392 Score = 426 bits (472), Expect = 5e-117 Identities = 271/294 (92%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||| ||||| ||| ||||| | | ||||||||||||||| || Sbjct 2392639 CTCCCACTTATTCTACACTTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTTAA 2392580 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||| || |||||||| ||||||||||||||||||||||||||||||| | Sbjct 2392579 CAGGGTCTTCTTTCTCCTCTGATTCCACCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGG 2392520 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2392519 ATAGTAGGTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 2392460 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2392459 ATGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCAAGCCGTTTACCCGCGCTTCA 2392400 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCA 530 ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2392399 TTGAACTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCACGTCA 2392346 Score = 80.6 bits (88), Expect = 9e-13 Identities = 82/107 (77%), Gaps = 4/107 (4%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||| ||| || Sbjct 2392880 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACTTGCATTGCA 2392821 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| |||| ||| | ||| || ||||||||||||| || |||| Sbjct 2392820 GTTTGACAGGTGTACTGCC----CCGAACTCCCCACCTGGCACTGTC 2392778 >seq152 Length=13249639 Score = 316 bits (350), Expect = 7e-84 Identities = 223/255 (87%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 239 CCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACA 298 |||||||||||||||||||||| ||| |||| | | |||||||||||||||||||| Sbjct 6996613 CCCACTTATTCTACACCTCTCATGTCTCCTCACTGTGCCAGACTAGAGTCAAGCTCAACA 6996554 Query 299 GGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGAT 358 |||||||||||| | ||||||| |||||||| |||||||||||||||||| ||| ||| Sbjct 6996553 TCGTCTTCTTTCCCTGATGATTCCTCCAAGCCCATTCCCTTGGCTGTGGTTTTGCTGGAT 6996494 Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 ||||| |||||||||||||||||| ||| |||||||||||| ||| ||||||||||||| Sbjct 6996493 AGTAGGTAGGGACAGTGGGAATCTTGTTCATCCATTCATGCAGGTCGCTAATTAGATGAC 6996434 Query 419 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTT 478 ||||||||||||| |||||||||||||||| |||||||| | ||||||| | ||| || Sbjct 6996433 GAGGCATTTGGCTGCCTTAAGAGAGTCATACTTACTCCCTGCATTTACCCACACTTCATT 6996374 Query 479 GAATTTCTTCACTTT 493 ||||||||||||||| Sbjct 6996373 GAATTTCTTCACTTT 6996359 >seq291 Length=2493095 Score = 259 bits (286), Expect = 2e-66 Identities = 189/218 (87%), Gaps = 5/218 (2%) Strand=Plus/Minus Query 323 GCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCT 382 ||||| ||| |||||||| |||||||||| || |||||||| |||||||||||||||||| Sbjct 2407115 GCCAAACCCATTCCCTTGTCTGTGGTTTCTCTGGATAGTAGGTAGGGACAGTGGGAATCT 2407056 Query 383 CGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGA 442 | || ||||||||||| || | |||||||||||||| ||||||||||||||||||||| | Sbjct 2407055 CCTTCATCCATTCATGTGCATTACTAATTAGATGACCAGGCATTTGGCTACCTTAAGAAA 2406996 Query 443 GTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAG 502 |||||||||||| ||| |||||| || ||| |||| |||||||||||||||||||| Sbjct 2406995 GTCATAGTTACT--TGCCATTTACCTGCACTTCACTGAACTTCTTCACTTTGACATTCAG 2406938 Query 503 AGCACTGGGCAGAAATCACATTGCGTC---AACATCAC 537 ||||| ||||||||||||||| | ||| |||||||| Sbjct 2406937 AGCACCGGGCAGAAATCACATCGAGTCAAGAACATCAC 2406900 >seq15 Length=41692901 Score = 251 bits (278), Expect = 2e-64 Identities = 224/284 (79%), Gaps = 26/284 (9%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||| || |||||||||||| ||| ||||| | | | |||||||||||||||||| Sbjct 38478946 CTCCCACTCATCCTACACCTCTCATGTCCCTTCACCATGCCAGACTAGAGTCAAGCTCAA 38479005 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||| ||||||| || |||||||||||| |||||| || | Sbjct 38479006 CAGGGTCATCTTTCC------AT------------GTTCCCTTGGCTCTGGTTTTGCCGG 38479047 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| | |||||||||| |||| |||| || || |||||||||||||| Sbjct 38479048 ATAGTAGGTTGGGACAGTGGAGATCTT--------ATTCCTGTGCATCACTAATTAGATG 38479099 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 |||||| |||||||| ||||||||||||||||||||||||| | ||||||| |||| Sbjct 38479100 ACGAGGAATTTGGCTTCCTTAAGAGAGTCATAGTTACTCCCACGATTTACCCAGGCTTCA 38479159 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 ||||||||||||||||||||||| ||||||||| ||||||||| Sbjct 38479160 TTGAATTTCTTCACTTTGACATTTAGAGCACTGACCAGAAATCA 38479203 >seq92 Length=6016729 Score = 215 bits (238), Expect = 2e-53 Identities = 167/196 (85%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398 |||||||||| || || || ||||| |||||||||||||||| || || ||||||||||| Sbjct 4756217 TGGCTGTGGTATCTCTGGACAGTAGGTAGGGACAGTGGGAATTTCATTCATCCATTCATG 4756276 Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTT-AAGAGAGTCATAGTTACTCCC 457 | | ||| |||||||||||| ||| ||||||| ||||| || | |||||| ||||||||| Sbjct 4756277 CACATCATTAATTAGATGACAAGGTATTTGGCCACCTTAAAAAAAGTCATGGTTACTCCC 4756336 Query 458 GCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAA 517 || ||||||| || | ||||||||||||| ||||||||||||| ||||||||||||| Sbjct 4756337 ACCTTTTACCCATGC-TCATTGAATTTCTTCATTTTGACATTCAGAACACTGGGCAGAAA 4756395 Query 518 TCACATTGCGTCAACA 533 |||||| || |||||| Sbjct 4756396 TCACATGGCATCAACA 4756411 >seq131 Length=32902730 Score = 181 bits (200), Expect = 3e-43 Identities = 215/286 (75%), Gaps = 8/286 (3%) Strand=Plus/Plus Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTC-GGACTAGAGTCAAGCTCAA 296 ||||||||| ||||||| || | ||| | ||| ||| || || ||| |||| Sbjct 1566281 TCCCACTTAATCTACACTTCCTATGTCTCTGCACTGTGTCAGGTTTACAGTT----TCAA 1566336 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||| ||||||||| || | || | | ||||| ||||||||||||||||||| || Sbjct 1566337 CAGAGTCTTCTTTGACCACAGAGTTTTCTAAGCCA-TTCCCTTGGCTGTGGTTTCATCAG 1566395 Query 357 ATAGTAGATAGGGACAGTGGGAA-TCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 || || | |||||||| || | || || | |||||||||| || || ||||||| Sbjct 1566396 TTAAGAGCGAAAGACAGTGGAAAGTATCATTCACCCATTCATGCATGTTCCTGATTAGAT 1566455 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCC-GTTTACCCGCGCTT 474 | | ||||||||||||||||||||||||| |||||| ||| || ||||| | | |||| Sbjct 1566456 GGTGGAGCATTTGGCTACCTTAAGAGAGTCACAGTTACACCCACCAGTTTATCTGGGCTT 1566515 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 |||||||||||||||||||||||||| |||| |||| | |||| Sbjct 1566516 CAGTGAATTTCTTCACTTTGACATTCAGAACACTAGGCAAATATCA 1566561 >seq198 Length=19200852 Score = 156 bits (172), Expect = 1e-35 Identities = 180/236 (76%), Gaps = 11/236 (5%) Strand=Plus/Plus Query 286 GTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGT 345 || ||||||| | |||||| || | |||||| ||||||| ||||| | |||| Sbjct 17831518 GTTAAGCTCATCCAGGTCTTT----CCTGTTGATTCTGCCAAGCTAGTTCC-TGGGCTAC 17831572 Query 346 GGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 405 || | || ||| ||| |||| ||| ||||||||| ||| |||||||||| || ||| Sbjct 17831573 ACTT-CACTGGATGCTAGGTAGGAACACTGGGAATCTTGTTCATCCATTCATAGGCATCA 17831631 Query 406 CTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTA 465 || | |||||| |||| |||||||||| | |||| || || ||||||| | | || Sbjct 17831632 CTGTTCAGATGATGAGGGGTTTGGCTACCCTCAGAG-GT-ATGGTTACTCTCT---TATA 17831686 Query 466 CCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 521 ||| ||||| |||||||||||| ||||||||||||||||| | |||||||| |||| Sbjct 17831687 CCCTCGCTTCGTTGAATTTCTTTACTTTGACATTCAGAGCTCCGGGCAGAAGTCAC 17831742 >seq261 Length=13056691 Score = 125 bits (138), Expect = 2e-26 Identities = 123/162 (76%), Gaps = 14/162 (9%) Strand=Plus/Minus Query 239 CCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACA 298 ||||||||||||| |||||||| | | ||| | | | || ||||||| |||||||| Sbjct 9542350 CCCACTTATTCTATACCTCTCATGGCTCTTCCCTGTGCCAGAACAGAGTCAGGCTCAACA 9542291 Query 299 G--------------GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTG 344 | |||||||||||||| |||||||| ||||||| | |||||||||| Sbjct 9542290 GGATCTGGCTCAACAGGTCTTCTTTCCCCACTGATTCCACCAAGCCTGGCCCCTTGGCTG 9542231 Query 345 TGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTT 386 ||||||| || | |||||| |||||| ||||||||||| ||| Sbjct 9542230 TGGTTTCACTGGGTAGTAGGTAGGGATAGTGGGAATCTTGTT 9542189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634810511712