Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq125 104 4e-20 seq21327 86.0 1e-14 seq19044 86.0 1e-14 seq103 77.0 5e-12 seq166 75.2 2e-11 >seq125 Length=3337254 Score = 104 bits (114), Expect = 4e-20 Identities = 97/121 (80%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 16549 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 16492 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | || ||||||||||||| |||||||| |||||||||||||||||||||||| | ||| Sbjct 16491 GGGGCAAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCCCTCCCA 16432 Query 121 G 121 | Sbjct 16431 G 16431 >seq21327 Length=701659 Score = 86.0 bits (94), Expect = 1e-14 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 32 TGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGC 91 |||| | || | || |||| || || || |||||||||||||||| |||||||| | Sbjct 692863 TGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGAC 692922 Query 92 TGAACGCCTCTAAGTCAGAATCCATGCCAG 121 |||||||||||||||||||||||| |||| Sbjct 692923 TGAACGCCTCTAAGTCAGAATCCAGCCCAG 692952 >seq19044 Length=2450392 Score = 86.0 bits (94), Expect = 1e-14 Identities = 93/121 (77%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| ||||||||||| |||||| | ||||| | || | || |||| || || | Sbjct 2393204 GTACAAGAGGAACCGCACG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 2393261 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | || ||||||||||||| |||||||| ||||| |||||||||||| ||||| | ||| Sbjct 2393262 GGGGCAAAGCTACCATCTGTGGGATTATGACTGAATGCCTCTAAGTCAAAATCCCTCCCA 2393321 Query 121 G 121 | Sbjct 2393322 G 2393322 >seq103 Length=31278376 Score = 77.0 bits (84), Expect = 5e-12 Identities = 59/70 (84%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 45 TGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAA 104 || |||| || || || |||||||| ||||||| |||||||| |||||||||||||| Sbjct 5452916 TGGCTGAGGAGCCAATGGGGCGAAGCTCCCATCTGTGGGATTATGACTGAACGCCTCTAA 5452857 Query 105 GTCAGAATCC 114 |||||||||| Sbjct 5452856 GTCAGAATCC 5452847 >seq166 Length=7666174 Score = 75.2 bits (82), Expect = 2e-11 Identities = 64/79 (81%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 43 GCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCT 102 |||| |||| || ||||| | |||| |||| ||||| |||||||| |||||||||||| Sbjct 4626765 GCTGCCTGAGGAGCCAGTGGGGTGAAGTTACCCTCTGCAGGATTATGACTGAACGCCTCT 4626706 Query 103 AAGTCAGAATCCATGCCAG 121 | ||||||||| | |||| Sbjct 4626705 CATTCAGAATCCTTCCCAG 4626687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819010972416