Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09]
23,819 sequences; 2,301,379,344 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq125 104 4e-20
seq21327 86.0 1e-14
seq19044 86.0 1e-14
seq103 77.0 5e-12
seq166 75.2 2e-11
>seq125
Length=3337254
Score = 104 bits (114), Expect = 4e-20
Identities = 97/121 (80%), Gaps = 2/121 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | |||||| | ||||| | || | || |||| || || |
Sbjct 16549 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 16492
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| || ||||||||||||| |||||||| |||||||||||||||||||||||| | |||
Sbjct 16491 GGGGCAAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCCCTCCCA 16432
Query 121 G 121
|
Sbjct 16431 G 16431
>seq21327
Length=701659
Score = 86.0 bits (94), Expect = 1e-14
Identities = 73/90 (81%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 32 TGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGC 91
|||| | || | || |||| || || || |||||||||||||||| |||||||| |
Sbjct 692863 TGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGAC 692922
Query 92 TGAACGCCTCTAAGTCAGAATCCATGCCAG 121
|||||||||||||||||||||||| ||||
Sbjct 692923 TGAACGCCTCTAAGTCAGAATCCAGCCCAG 692952
>seq19044
Length=2450392
Score = 86.0 bits (94), Expect = 1e-14
Identities = 93/121 (77%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||| ||||||||||| |||||| | ||||| | || | || |||| || || |
Sbjct 2393204 GTACAAGAGGAACCGCACG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 2393261
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| || ||||||||||||| |||||||| ||||| |||||||||||| ||||| | |||
Sbjct 2393262 GGGGCAAAGCTACCATCTGTGGGATTATGACTGAATGCCTCTAAGTCAAAATCCCTCCCA 2393321
Query 121 G 121
|
Sbjct 2393322 G 2393322
>seq103
Length=31278376
Score = 77.0 bits (84), Expect = 5e-12
Identities = 59/70 (84%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 45 TGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAA 104
|| |||| || || || |||||||| ||||||| |||||||| ||||||||||||||
Sbjct 5452916 TGGCTGAGGAGCCAATGGGGCGAAGCTCCCATCTGTGGGATTATGACTGAACGCCTCTAA 5452857
Query 105 GTCAGAATCC 114
||||||||||
Sbjct 5452856 GTCAGAATCC 5452847
>seq166
Length=7666174
Score = 75.2 bits (82), Expect = 2e-11
Identities = 64/79 (81%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 43 GCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCT 102
|||| |||| || ||||| | |||| |||| ||||| |||||||| ||||||||||||
Sbjct 4626765 GCTGCCTGAGGAGCCAGTGGGGTGAAGTTACCCTCTGCAGGATTATGACTGAACGCCTCT 4626706
Query 103 AAGTCAGAATCCATGCCAG 121
| ||||||||| | ||||
Sbjct 4626705 CATTCAGAATCCTTCCCAG 4626687
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819010972416
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |