Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09]
23,819 sequences; 2,301,379,344 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq125 360 6e-97
seq19044 250 8e-64
seq21327 197 4e-48
seq199 78.8 3e-12
seq162 77.0 1e-11
>seq125
Length=3337254
Score = 360 bits (398), Expect = 6e-97
Identities = 422/567 (74%), Gaps = 69/567 (12%)
Strand=Plus/Plus
Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||||||||||||||| | || | |||||| ||||||| ||||| | |||||||||||
Sbjct 25013 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 25072
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 25073 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 25132
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
||||||||||||||||||||||||||||| ||||||||| |||||| | ||||||||||
Sbjct 25133 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 25192
Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCC----- 236
|| |||||||||||||||||||||||||| || ||||| | |||||
Sbjct 25193 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCACCAC 25252
Query 237 --GGCTCAAGGCCATGCGATTCGT--TAAGTTATTATGAATCACCAA-------GGAG-- 283
|| | || | |||||| || | ||||| || || |||| ||||
Sbjct 25253 GGGGGGCGGGGGCGTGCGATAGGTAGGAGGTTATCTAGAGTCCCCAAAGCCGCTGGAGCC 25312
Query 284 --------CCCCGAAGGG--------------------CGTTGGTTTTTTATCTAATAAA 315
||||| ||| ||||| |||| |||| |||||
Sbjct 25313 CGCCCCCCCCCCGCCGGGGCCAGGGGGGAGGCTGACCAGGTTGG-TTTTGATCTGATAAA 25371
Query 316 TACA------CCCCTTCCGA----AGTCGGGGTTTTTAG-CATGTATTAGCTCTAGAATT 364
| || |||| | ||| ||| | | | | ||||||||||||||||||||
Sbjct 25372 TGCACACATCCCCCCTGCGAGGGGGGTCAGCGCCCATGGACATGTATTAGCTCTAGAATT 25431
Query 365 ACCACGGTTATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATG 419
||||| |||||||| |||| | || | | | |||| || |||||||||||||| |
Sbjct 25432 ACCACAGTTATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAATGATAACTGATTTAAGG 25491
Query 420 AGCCATTCGCAGTTTCACTGTA-TAGAT-TGCTTATACTTAGACATGCATGGCTTAATCT 477
|||||||| ||||||||||||| || | ||| ||||||||| ||||||||||||||||
Sbjct 25492 AGCCATTCACAGTTTCACTGTACCAGCTGTGC--ATACTTAGATATGCATGGCTTAATCT 25549
Query 478 TTGAGACAAGCATATGACTACTGGCAG 504
|||||||||||||||| ||||||||||
Sbjct 25550 TTGAGACAAGCATATG-CTACTGGCAG 25575
Score = 118 bits (130), Expect = 3e-24
Identities = 71/75 (95%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 67 GTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAG 126
||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 23669 GTCGGGAGTGGGTAATTTGCGTGCCTGCTGCCTTCCTTGGATGTGGTAGCCATTTCTCAG 23728
Query 127 GCTCCCTCTCCGGAA 141
|||||||||||| ||
Sbjct 23729 GCTCCCTCTCCGAAA 23743
>seq19044
Length=2450392
Score = 250 bits (276), Expect = 8e-64
Identities = 192/225 (85%), Gaps = 2/225 (1%)
Strand=Plus/Minus
Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||||||||||||| | |||| |||||| | ||||||| ||||| | ||||||||||
Sbjct 2385005 ACTCATTCCAATTAAAGGACCTCAAAAGGGTCCTGTATTGTTATTTTTCATCACTACCTC 2384946
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
|||| ||||||| |||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 2384945 CCCGGGTCGGGAGTGGGTAATTTGCTCACCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 2384886
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
||||||| |||||||| |||| ||||||| ||| ||||| |||||| | ||||||||||
Sbjct 2384885 CTCAGGCCCCCTCTCCAGAATTGAACCCTGATT-CCCGTCACCCGTGGTCACCATGGTAG 2384827
Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATG 226
|| | |||||||||||||||||||||||||| ||| ||||
Sbjct 2384826 GCACAGAGACTACCATCGAAAGTTGATAGGGCAGACATTCAAATG 2384782
Score = 89.7 bits (98), Expect = 2e-15
Identities = 74/89 (83%), Gaps = 5/89 (6%)
Strand=Plus/Minus
Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA----AGGTA-CTATCAAA 398
|||||||||||||| ||||||||||| |||||||| |||| | || || | ||||||
Sbjct 2384613 GCATGTATTAGCTCCAGAATTACCACAGTTATCCAAGTAGGAGAGGAGCTAGCGATCAAA 2384554
Query 399 TAAACGATAACTGATTTAATGAGCCATTC 427
||| | |||||||||||||||||||||
Sbjct 2384553 GGAACCACAACTGATTTAATGAGCCATTC 2384525
>seq21327
Length=701659
Score = 197 bits (218), Expect = 4e-48
Identities = 149/173 (86%), Gaps = 7/173 (4%)
Strand=Plus/Minus
Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG- 118
|||||| ||||||| ||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 691291 TCCCCGGGTCGGGAGTGGGTAATTTGCGTGCCTGCTGCCTTCCTTCGATGTGGTAGCCTA 691232
Query 119 ----TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACC 174
|||||||||||||||||||||||||||||||| ||||||||| |||||| | |||
Sbjct 691231 GCCATTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACC 691172
Query 175 ATGGTAGGCCACTATC-CTACCATCGAAAGTTGATAGGGCAGAAATTTGAATG 226
||||||||| || | ||||||| |||||||||||||||||| || |||||
Sbjct 691171 ATGGTAGGC-ACAGTGACTACCATGGAAAGTTGATAGGGCAGACGTTCGAATG 691120
>seq199
Length=18468921
Score = 78.8 bits (86), Expect = 3e-12
Identities = 72/91 (79%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 71 GGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTC 130
||| |||| ||||| | |||||||||| ||| | ||||||| | | | |||||||||||
Sbjct 6307208 GGAATGGGGAATTTACATGCCTGCTGCCATCCCTAGATGTGGCATCTGCTTCTCAGGCTC 6307267
Query 131 CCTCTCCGGAATCGAACCCTAATTCCCCGTT 161
||||||| ||| | | ||| ||||||| ||
Sbjct 6307268 CCTCTCCAGAACCCTATCCTGATTCCCCTTT 6307298
>seq162
Length=67462175
Score = 77.0 bits (84), Expect = 1e-11
Identities = 81/104 (78%), Gaps = 2/104 (2%)
Strand=Plus/Minus
Query 3 ACTCATTCCAATTACA-AGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
||||||||| |||||| || |||||| ||||||| | ||| || ||||||||||
Sbjct 54959506 ACTCATTCCTATTACAGAGCATTGAAAGAGTCCTGTATTGCTGTTTTTTATCACTACCTC 54959447
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTG 105
||| ||| ||| ||| ||||||| || |||| |||| ||||||
Sbjct 54959446 CCCAGGTCAGGAGTGGATAATTTGTGCACCTG-TGCCATCCTTG 54959404
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510040237824
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |