Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq125 360 6e-97 seq19044 250 8e-64 seq21327 197 4e-48 seq199 78.8 3e-12 seq162 77.0 1e-11 >seq125 Length=3337254 Score = 360 bits (398), Expect = 6e-97 Identities = 422/567 (74%), Gaps = 69/567 (12%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 25013 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 25072 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 25073 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 25132 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 25133 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 25192 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCC----- 236 || |||||||||||||||||||||||||| || ||||| | ||||| Sbjct 25193 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCACCAC 25252 Query 237 --GGCTCAAGGCCATGCGATTCGT--TAAGTTATTATGAATCACCAA-------GGAG-- 283 || | || | |||||| || | ||||| || || |||| |||| Sbjct 25253 GGGGGGCGGGGGCGTGCGATAGGTAGGAGGTTATCTAGAGTCCCCAAAGCCGCTGGAGCC 25312 Query 284 --------CCCCGAAGGG--------------------CGTTGGTTTTTTATCTAATAAA 315 ||||| ||| ||||| |||| |||| ||||| Sbjct 25313 CGCCCCCCCCCCGCCGGGGCCAGGGGGGAGGCTGACCAGGTTGG-TTTTGATCTGATAAA 25371 Query 316 TACA------CCCCTTCCGA----AGTCGGGGTTTTTAG-CATGTATTAGCTCTAGAATT 364 | || |||| | ||| ||| | | | | |||||||||||||||||||| Sbjct 25372 TGCACACATCCCCCCTGCGAGGGGGGTCAGCGCCCATGGACATGTATTAGCTCTAGAATT 25431 Query 365 ACCACGGTTATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATG 419 ||||| |||||||| |||| | || | | | |||| || |||||||||||||| | Sbjct 25432 ACCACAGTTATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAATGATAACTGATTTAAGG 25491 Query 420 AGCCATTCGCAGTTTCACTGTA-TAGAT-TGCTTATACTTAGACATGCATGGCTTAATCT 477 |||||||| ||||||||||||| || | ||| ||||||||| |||||||||||||||| Sbjct 25492 AGCCATTCACAGTTTCACTGTACCAGCTGTGC--ATACTTAGATATGCATGGCTTAATCT 25549 Query 478 TTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||| |||||||||| Sbjct 25550 TTGAGACAAGCATATG-CTACTGGCAG 25575 Score = 118 bits (130), Expect = 3e-24 Identities = 71/75 (95%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 67 GTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAG 126 ||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 23669 GTCGGGAGTGGGTAATTTGCGTGCCTGCTGCCTTCCTTGGATGTGGTAGCCATTTCTCAG 23728 Query 127 GCTCCCTCTCCGGAA 141 |||||||||||| || Sbjct 23729 GCTCCCTCTCCGAAA 23743 >seq19044 Length=2450392 Score = 250 bits (276), Expect = 8e-64 Identities = 192/225 (85%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||| | |||| |||||| | ||||||| ||||| | |||||||||| Sbjct 2385005 ACTCATTCCAATTAAAGGACCTCAAAAGGGTCCTGTATTGTTATTTTTCATCACTACCTC 2384946 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| |||||||||||| | |||||||||||||||||||||||||||||||| Sbjct 2384945 CCCGGGTCGGGAGTGGGTAATTTGCTCACCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 2384886 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||| |||||||| |||| ||||||| ||| ||||| |||||| | |||||||||| Sbjct 2384885 CTCAGGCCCCCTCTCCAGAATTGAACCCTGATT-CCCGTCACCCGTGGTCACCATGGTAG 2384827 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATG 226 || | |||||||||||||||||||||||||| ||| |||| Sbjct 2384826 GCACAGAGACTACCATCGAAAGTTGATAGGGCAGACATTCAAATG 2384782 Score = 89.7 bits (98), Expect = 2e-15 Identities = 74/89 (83%), Gaps = 5/89 (6%) Strand=Plus/Minus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA----AGGTA-CTATCAAA 398 |||||||||||||| ||||||||||| |||||||| |||| | || || | |||||| Sbjct 2384613 GCATGTATTAGCTCCAGAATTACCACAGTTATCCAAGTAGGAGAGGAGCTAGCGATCAAA 2384554 Query 399 TAAACGATAACTGATTTAATGAGCCATTC 427 ||| | ||||||||||||||||||||| Sbjct 2384553 GGAACCACAACTGATTTAATGAGCCATTC 2384525 >seq21327 Length=701659 Score = 197 bits (218), Expect = 4e-48 Identities = 149/173 (86%), Gaps = 7/173 (4%) Strand=Plus/Minus Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG- 118 |||||| ||||||| ||||||||||||| |||||||||||||||| |||||||||||| Sbjct 691291 TCCCCGGGTCGGGAGTGGGTAATTTGCGTGCCTGCTGCCTTCCTTCGATGTGGTAGCCTA 691232 Query 119 ----TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACC 174 |||||||||||||||||||||||||||||||| ||||||||| |||||| | ||| Sbjct 691231 GCCATTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACC 691172 Query 175 ATGGTAGGCCACTATC-CTACCATCGAAAGTTGATAGGGCAGAAATTTGAATG 226 ||||||||| || | ||||||| |||||||||||||||||| || ||||| Sbjct 691171 ATGGTAGGC-ACAGTGACTACCATGGAAAGTTGATAGGGCAGACGTTCGAATG 691120 >seq199 Length=18468921 Score = 78.8 bits (86), Expect = 3e-12 Identities = 72/91 (79%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 71 GGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTC 130 ||| |||| ||||| | |||||||||| ||| | ||||||| | | | ||||||||||| Sbjct 6307208 GGAATGGGGAATTTACATGCCTGCTGCCATCCCTAGATGTGGCATCTGCTTCTCAGGCTC 6307267 Query 131 CCTCTCCGGAATCGAACCCTAATTCCCCGTT 161 ||||||| ||| | | ||| ||||||| || Sbjct 6307268 CCTCTCCAGAACCCTATCCTGATTCCCCTTT 6307298 >seq162 Length=67462175 Score = 77.0 bits (84), Expect = 1e-11 Identities = 81/104 (78%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACA-AGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 ||||||||| |||||| || |||||| ||||||| | ||| || |||||||||| Sbjct 54959506 ACTCATTCCTATTACAGAGCATTGAAAGAGTCCTGTATTGCTGTTTTTTATCACTACCTC 54959447 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTG 105 ||| ||| ||| ||| ||||||| || |||| |||| |||||| Sbjct 54959446 CCCAGGTCAGGAGTGGATAATTTGTGCACCTG-TGCCATCCTTG 54959404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510040237824