Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25]
5,016 sequences; 3,598,443,077 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq217 352 5e-95
seq4092 345 7e-93
seq4 205 2e-50
seq7 197 2e-48
seq9 143 5e-32
seq2 125 1e-26
seq3 105 1e-20
seq1 96.9 6e-18
seq6 78.8 2e-12
seq5 75.2 2e-11
>seq217
Length=15910
Score = 352 bits (390), Expect = 5e-95
Identities = 256/295 (87%), Gaps = 1/295 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | ||||| || | | | || |||||||||||||||||||||||||||||
Sbjct 1470 TACTGAGCAGGATTACTATGGCGACAACCCCTCATCAGTAGGGTAAAACTAACCTGTCTC 1529
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1530 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 1589
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1590 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 1649
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 1650 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 1709
Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294
| ||| | | || | |||||||| ||||| | |||||| ||| ||||||||
Sbjct 1710 TAAAACCCCAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTCA 1764
>seq4092
Length=58290
Score = 345 bits (382), Expect = 7e-93
Identities = 257/297 (87%), Gaps = 3/297 (1%)
Strand=Plus/Minus
Query 1 TACTAAGC-GGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCT 58
|||| ||| || ||||| || | | | || ||||||||||||||||||||||||||||
Sbjct 14718 TACTGAGCAGGGATTACTATGGCGACAACCCCTCATCAGTAGGGTAAAACTAACCTGTCT 14659
Query 59 CATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACC 118
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 14658 CACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGT 14599
Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 14598 GAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCT 14539
Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 14538 ATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGC 14479
Query 239 CTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACAC-TTTCATGGTTTGTATTCA 294
| ||| | | || | |||||||| ||||| | | ||||| ||| ||||||||
Sbjct 14478 TTAAAACCCCAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTTCACGGTCTGTATTCA 14422
>seq4
Length=435153693
Score = 205 bits (226), Expect = 2e-50
Identities = 169/206 (82%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 89 TATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCC 148
|||||||||||||||||| || |||| |||||||||||| ||||| ||||||||
Sbjct 148860458 TATTAGTGGGTGAACAATATAAGGCTTGGTGAATTCTGCTTCAAAATGATGGGAAGAGCT 148860399
Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTAT 208
||||||||||||||||||||| | ||| |||||||||||||| |||||||||||| ||
Sbjct 148860398 GACATCGAAGGATCAAAAAGCGAGGTCATTATGAACGCTTGGCCACCACAAGCCAGTCAT 148860339
Query 209 CCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATA 268
||||||||||||||||||| |||||| || | |||| | | || | |||||||| |
Sbjct 148860338 CCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAATCCCAAAGGCCAGAAGGATCGTGA 148860279
Query 269 GGCCACACTTTCATGGTTTGTATTCA 294
|| | |||||||||| ||||||||
Sbjct 148860278 TGCTCCGCTTTCATGGTCTGTATTCA 148860253
Score = 107 bits (118), Expect = 3e-21
Identities = 64/67 (96%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||
Sbjct 182068171 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAATCCCAGCTCACATTCCCTA 182068230
Query 91 TTAGTGG 97
|||||||
Sbjct 182068231 TTAGTGG 182068237
>seq7
Length=260857928
Score = 197 bits (218), Expect = 2e-48
Identities = 169/206 (82%), Gaps = 2/206 (1%)
Strand=Plus/Minus
Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149
||||||||||||| ||||||| |||| |||||||||||| |||||||||||||| |
Sbjct 133405011 ATTAGTGGGTGAATAATCCAATGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCTG 133404952
Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209
|||| ||||||||||||||| || || | |||| ||||||| || |||||||||||||
Sbjct 133404951 ACATTGAAGGATCAAAAAGCGACATCTCACTGAATGCTTGGCCACCTCAAGCCAGTTATC 133404892
Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA-CTAAAGGATCGATA 268
| |||||||||||||||| |||||| | |||||| || | || | |||||||| |
Sbjct 133404891 CTTGTGGTAACTTTTCTGACACCTCCTG-CTCAAAACTCCAAAGATCAGAAGGATCGTGA 133404833
Query 269 GGCCACACTTTCATGGTTTGTATTCA 294
|||| |||||||| ||| ||||||||
Sbjct 133404832 GGCCCCACTTTCAAGGTCTGTATTCA 133404807
>seq9
Length=79335909
Score = 143 bits (158), Expect = 5e-32
Identities = 109/129 (84%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91
|| ||||||| | |||||||||||||||| ||| |||||| ||||||||||| |||||||
Sbjct 56568207 CAGCAGTAGGTTTAAACTAACCTGTCTCACGACAGTCTAATCCCAGCTCACGCTCCCTAT 56568148
Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151
||| |||||||||||||| ||||| |||||||| ||| |||| | |||||||||||
Sbjct 56568147 TAGCGGGTGAACAATCCAGCGCTTGGGGAATTCTGTTTCACAATGACAAGAAGAGCCGAC 56568088
Query 152 ATCGAAGGA 160
| ||||||
Sbjct 56568087 CTTGAAGGA 56568079
>seq2
Length=541556283
Score = 125 bits (138), Expect = 1e-26
Identities = 95/111 (86%), Gaps = 1/111 (1%)
Strand=Plus/Plus
Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149
|||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
Sbjct 79959637 ATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCTG 79959696
Query 150 ACATCGAAGGATC-AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAA 199
|| || ||| ||| ||||||||| ||||||||||| |||||| ||||||
Sbjct 79959697 ACTTCCAAGAATCAAAAAAGCAATGTCGCTATGAATCCTTGGCCACCACAA 79959747
Score = 125 bits (138), Expect = 1e-26
Identities = 143/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 36 AGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGT 95
|||| ||||||| ||| | | ||||||| | |||||||||||||| || || |||||
Sbjct 194527648 AGTACAGTAAAACCAACTTTTATCATGACAATTTAAACCCAGCTCACACTCTCTGTTAGT 194527589
Query 96 GGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCG 155
|| ||||||||||| || || || |||||| || || ||||||| | | || |
Sbjct 194527588 AGGAGAACAATCCAATTCTGGGTGACTTGTGCTTCCTAATAATGGGAAGAGGCAATATTG 194527529
Query 156 AAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTG 215
||| |||||||| | ||| | ||| |||| |||||| ||||||| | ||| || ||
Sbjct 194527528 AAGAATCAAAAAATGATGTCTGTGCGAATGCTTAGCTGCCTCAAGCCATTCATCTCTATG 194527469
Query 216 GTAACTTTTCTG 227
| ||||||||||
Sbjct 194527468 GCAACTTTTCTG 194527457
Score = 107 bits (118), Expect = 3e-21
Identities = 88/107 (82%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
|||||||||| | |||| |||||||| ||||| ||||||||||||||||| ||||||
Sbjct 475364725 AATTCTGCTTTGAGATGACAGGAAGAGGTGACATGGAAGGATCAAAAAGCAAAATCGCTA 475364784
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCT 226
| || |||||| ||||||| || ||||| | |||||| |||||||
Sbjct 475364785 TTAATGCTTGGTCACCACAAGTCATTTATCTCAGTGGTACCTTTTCT 475364831
>seq3
Length=527952102
Score = 105 bits (116), Expect = 1e-20
Identities = 90/111 (81%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 184 CGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAA 243
|||||||||||||||||||||||||||||||||||||||||||| |||||| || | ||
Sbjct 422599532 CGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAA 422599473
Query 244 ATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294
| | | || | ||||||| ||||| | |||||| || ||||||||
Sbjct 422599472 ACCCCAAAGGTCAGAAGGATCATAAGGCCCCGCTTTCACAGTCTGTATTCA 422599422
>seq1
Length=748055161
Score = 96.9 bits (106), Expect = 6e-18
Identities = 108/143 (76%), Gaps = 5/143 (3%)
Strand=Plus/Plus
Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89
|| ||| | | |||||||| ||||| ||| |||| || ||| ||||| ||| ||||| |
Sbjct 262705373 GTTATCGGGAAGGTAAAACAAACCTTTCTTATGAGTGTGTAACCCCAGGTCATGTTCCTT 262705432
Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149
|| ||| || ||||||| || || |||||| ||| | | |||||||||||| |
Sbjct 262705433 ATAGCTGGCAGA-CAATCCA----TTGCCTGATTCTGATTCAGAAGGATAGGAAGAGCTG 262705487
Query 150 ACATCGAAGGATCAAAAAGCAAC 172
||| ||||||| ||||||||||
Sbjct 262705488 GCATTGAAGGATTAAAAAGCAAC 262705510
>seq6
Length=292091736
Score = 78.8 bits (86), Expect = 2e-12
Identities = 69/85 (81%), Gaps = 2/85 (2%)
Strand=Plus/Plus
Query 138 TAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCAC 197
||| | ||||| ||| |||||||||||||||| ||| ||||| | ||||||||| ||
Sbjct 71534975 TAGCAGGAGCCAACAGTGAAGGATCAAAAAGCA--GTCACTATGGAAACTTGGCTGCTAC 71535032
Query 198 AAGCCAGTTATCCCTGTGGTAACTT 222
||||||||||| ||||| |||||
Sbjct 71535033 TTGCCAGTTATCCTTGTGGCAACTT 71535057
>seq5
Length=304825324
Score = 75.2 bits (82), Expect = 2e-11
Identities = 102/141 (72%), Gaps = 5/141 (4%)
Strand=Plus/Minus
Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGG----TCTAAACCCAGCTCACGTTCC 87
|||| | |||||||||||||| ||||||| |||| ||||||| ||| ||||| |
Sbjct 254219731 CATCTGCAGGGTAAAACTAACTTGTCTCACAACGGCGGAAATAAACCCTGCTTACGTTTC 254219672
Query 88 CTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGC 147
| ||||| || | | ||| | |||||| |||||||||||| | |||| ||||
Sbjct 254219671 CCGTTAGT-GGAGGAGAATGCGACGCTTGGAGAATTCTGCTTCTCAGTAATAGACGGAGC 254219613
Query 148 CGACATCGAAGGATCAAAAAG 168
||| |||| |||||| ||
Sbjct 254219612 ACACAGGGAAGCATCAAACAG 254219592
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854357143296
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |