Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq217 352 5e-95 seq4092 345 7e-93 seq4 205 2e-50 seq7 197 2e-48 seq9 143 5e-32 seq2 125 1e-26 seq3 105 1e-20 seq1 96.9 6e-18 seq6 78.8 2e-12 seq5 75.2 2e-11 >seq217 Length=15910 Score = 352 bits (390), Expect = 5e-95 Identities = 256/295 (87%), Gaps = 1/295 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | | | || ||||||||||||||||||||||||||||| Sbjct 1470 TACTGAGCAGGATTACTATGGCGACAACCCCTCATCAGTAGGGTAAAACTAACCTGTCTC 1529 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1530 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 1589 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1590 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 1649 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 1650 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 1709 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | ||| | | || | |||||||| ||||| | |||||| ||| |||||||| Sbjct 1710 TAAAACCCCAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTCA 1764 >seq4092 Length=58290 Score = 345 bits (382), Expect = 7e-93 Identities = 257/297 (87%), Gaps = 3/297 (1%) Strand=Plus/Minus Query 1 TACTAAGC-GGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCT 58 |||| ||| || ||||| || | | | || |||||||||||||||||||||||||||| Sbjct 14718 TACTGAGCAGGGATTACTATGGCGACAACCCCTCATCAGTAGGGTAAAACTAACCTGTCT 14659 Query 59 CATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACC 118 || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 14658 CACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGT 14599 Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 14598 GAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCT 14539 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 14538 ATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGC 14479 Query 239 CTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACAC-TTTCATGGTTTGTATTCA 294 | ||| | | || | |||||||| ||||| | | ||||| ||| |||||||| Sbjct 14478 TTAAAACCCCAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTTCACGGTCTGTATTCA 14422 >seq4 Length=435153693 Score = 205 bits (226), Expect = 2e-50 Identities = 169/206 (82%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 89 TATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCC 148 |||||||||||||||||| || |||| |||||||||||| ||||| |||||||| Sbjct 148860458 TATTAGTGGGTGAACAATATAAGGCTTGGTGAATTCTGCTTCAAAATGATGGGAAGAGCT 148860399 Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTAT 208 ||||||||||||||||||||| | ||| |||||||||||||| |||||||||||| || Sbjct 148860398 GACATCGAAGGATCAAAAAGCGAGGTCATTATGAACGCTTGGCCACCACAAGCCAGTCAT 148860339 Query 209 CCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATA 268 ||||||||||||||||||| |||||| || | |||| | | || | |||||||| | Sbjct 148860338 CCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAATCCCAAAGGCCAGAAGGATCGTGA 148860279 Query 269 GGCCACACTTTCATGGTTTGTATTCA 294 || | |||||||||| |||||||| Sbjct 148860278 TGCTCCGCTTTCATGGTCTGTATTCA 148860253 Score = 107 bits (118), Expect = 3e-21 Identities = 64/67 (96%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||| Sbjct 182068171 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAATCCCAGCTCACATTCCCTA 182068230 Query 91 TTAGTGG 97 ||||||| Sbjct 182068231 TTAGTGG 182068237 >seq7 Length=260857928 Score = 197 bits (218), Expect = 2e-48 Identities = 169/206 (82%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 ||||||||||||| ||||||| |||| |||||||||||| |||||||||||||| | Sbjct 133405011 ATTAGTGGGTGAATAATCCAATGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCTG 133404952 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||| ||||||||||||||| || || | |||| ||||||| || ||||||||||||| Sbjct 133404951 ACATTGAAGGATCAAAAAGCGACATCTCACTGAATGCTTGGCCACCTCAAGCCAGTTATC 133404892 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA-CTAAAGGATCGATA 268 | |||||||||||||||| |||||| | |||||| || | || | |||||||| | Sbjct 133404891 CTTGTGGTAACTTTTCTGACACCTCCTG-CTCAAAACTCCAAAGATCAGAAGGATCGTGA 133404833 Query 269 GGCCACACTTTCATGGTTTGTATTCA 294 |||| |||||||| ||| |||||||| Sbjct 133404832 GGCCCCACTTTCAAGGTCTGTATTCA 133404807 >seq9 Length=79335909 Score = 143 bits (158), Expect = 5e-32 Identities = 109/129 (84%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 || ||||||| | |||||||||||||||| ||| |||||| ||||||||||| ||||||| Sbjct 56568207 CAGCAGTAGGTTTAAACTAACCTGTCTCACGACAGTCTAATCCCAGCTCACGCTCCCTAT 56568148 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 ||| |||||||||||||| ||||| |||||||| ||| |||| | ||||||||||| Sbjct 56568147 TAGCGGGTGAACAATCCAGCGCTTGGGGAATTCTGTTTCACAATGACAAGAAGAGCCGAC 56568088 Query 152 ATCGAAGGA 160 | |||||| Sbjct 56568087 CTTGAAGGA 56568079 >seq2 Length=541556283 Score = 125 bits (138), Expect = 1e-26 Identities = 95/111 (86%), Gaps = 1/111 (1%) Strand=Plus/Plus Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 |||||||||||||||||||||||||| |||||||||||| |||||||||||||| | Sbjct 79959637 ATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCTG 79959696 Query 150 ACATCGAAGGATC-AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAA 199 || || ||| ||| ||||||||| ||||||||||| |||||| |||||| Sbjct 79959697 ACTTCCAAGAATCAAAAAAGCAATGTCGCTATGAATCCTTGGCCACCACAA 79959747 Score = 125 bits (138), Expect = 1e-26 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 36 AGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGT 95 |||| ||||||| ||| | | ||||||| | |||||||||||||| || || ||||| Sbjct 194527648 AGTACAGTAAAACCAACTTTTATCATGACAATTTAAACCCAGCTCACACTCTCTGTTAGT 194527589 Query 96 GGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCG 155 || ||||||||||| || || || |||||| || || ||||||| | | || | Sbjct 194527588 AGGAGAACAATCCAATTCTGGGTGACTTGTGCTTCCTAATAATGGGAAGAGGCAATATTG 194527529 Query 156 AAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTG 215 ||| |||||||| | ||| | ||| |||| |||||| ||||||| | ||| || || Sbjct 194527528 AAGAATCAAAAAATGATGTCTGTGCGAATGCTTAGCTGCCTCAAGCCATTCATCTCTATG 194527469 Query 216 GTAACTTTTCTG 227 | |||||||||| Sbjct 194527468 GCAACTTTTCTG 194527457 Score = 107 bits (118), Expect = 3e-21 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||| | |||| |||||||| ||||| ||||||||||||||||| |||||| Sbjct 475364725 AATTCTGCTTTGAGATGACAGGAAGAGGTGACATGGAAGGATCAAAAAGCAAAATCGCTA 475364784 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCT 226 | || |||||| ||||||| || ||||| | |||||| ||||||| Sbjct 475364785 TTAATGCTTGGTCACCACAAGTCATTTATCTCAGTGGTACCTTTTCT 475364831 >seq3 Length=527952102 Score = 105 bits (116), Expect = 1e-20 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 184 CGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAA 243 |||||||||||||||||||||||||||||||||||||||||||| |||||| || | || Sbjct 422599532 CGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAA 422599473 Query 244 ATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | | | || | ||||||| ||||| | |||||| || |||||||| Sbjct 422599472 ACCCCAAAGGTCAGAAGGATCATAAGGCCCCGCTTTCACAGTCTGTATTCA 422599422 >seq1 Length=748055161 Score = 96.9 bits (106), Expect = 6e-18 Identities = 108/143 (76%), Gaps = 5/143 (3%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 || ||| | | |||||||| ||||| ||| |||| || ||| ||||| ||| ||||| | Sbjct 262705373 GTTATCGGGAAGGTAAAACAAACCTTTCTTATGAGTGTGTAACCCCAGGTCATGTTCCTT 262705432 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 || ||| || ||||||| || || |||||| ||| | | |||||||||||| | Sbjct 262705433 ATAGCTGGCAGA-CAATCCA----TTGCCTGATTCTGATTCAGAAGGATAGGAAGAGCTG 262705487 Query 150 ACATCGAAGGATCAAAAAGCAAC 172 ||| ||||||| |||||||||| Sbjct 262705488 GCATTGAAGGATTAAAAAGCAAC 262705510 >seq6 Length=292091736 Score = 78.8 bits (86), Expect = 2e-12 Identities = 69/85 (81%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 138 TAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCAC 197 ||| | ||||| ||| |||||||||||||||| ||| ||||| | ||||||||| || Sbjct 71534975 TAGCAGGAGCCAACAGTGAAGGATCAAAAAGCA--GTCACTATGGAAACTTGGCTGCTAC 71535032 Query 198 AAGCCAGTTATCCCTGTGGTAACTT 222 ||||||||||| ||||| ||||| Sbjct 71535033 TTGCCAGTTATCCTTGTGGCAACTT 71535057 >seq5 Length=304825324 Score = 75.2 bits (82), Expect = 2e-11 Identities = 102/141 (72%), Gaps = 5/141 (4%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGG----TCTAAACCCAGCTCACGTTCC 87 |||| | |||||||||||||| ||||||| |||| ||||||| ||| ||||| | Sbjct 254219731 CATCTGCAGGGTAAAACTAACTTGTCTCACAACGGCGGAAATAAACCCTGCTTACGTTTC 254219672 Query 88 CTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGC 147 | ||||| || | | ||| | |||||| |||||||||||| | |||| |||| Sbjct 254219671 CCGTTAGT-GGAGGAGAATGCGACGCTTGGAGAATTCTGCTTCTCAGTAATAGACGGAGC 254219613 Query 148 CGACATCGAAGGATCAAAAAG 168 ||| |||| |||||| || Sbjct 254219612 ACACAGGGAAGCATCAAACAG 254219592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854357143296