Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25]
5,016 sequences; 3,598,443,077 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq4092 98.7 2e-18
seq217 95.1 2e-17
seq2 86.0 1e-14
seq5 82.4 1e-13
seq4 80.6 4e-13
seq1 80.6 4e-13
>seq4092
Length=58290
Score = 98.7 bits (108), Expect = 2e-18
Identities = 93/115 (81%), Gaps = 3/115 (3%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACC-AGGCAG 59
|||||||||||||||| | |||||| | ||||| | || | || |||| || ||
Sbjct 14716 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAAGGAGCCAA 14773
Query 60 TGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
|| |||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 14774 TGGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 14828
>seq217
Length=15910
Score = 95.1 bits (104), Expect = 2e-17
Identities = 94/117 (80%), Gaps = 5/117 (4%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGA-ATAATTGGTTTTTGCGGCTGTCTGACCAGGCAG 59
|||||||||||||||| | |||||| || || ||| | || | || |||| || ||
Sbjct 1472 GTACGAGAGGAACCGCAGG-TTCAGACATTAT-GGTGTATGTGCTTGGCTGAGGAGCCAA 1415
Query 60 TGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTC--TAAGTCAGAATCC 114
|| |||||||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct 1414 TGGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCCGTAAGTCAGAATCC 1358
>seq2
Length=541556283
Score = 86.0 bits (94), Expect = 1e-14
Identities = 89/114 (78%), Gaps = 2/114 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||| | | |||||| | ||||| | || | || |||| || || |
Sbjct 13519718 GTACGAGAGGAACCACAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 13519661
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| |||||||||||||||| |||||||| |||||| ||| ||||||||||||
Sbjct 13519660 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACAGCTCCAAGTCAGAATCC 13519607
Score = 78.8 bits (86), Expect = 2e-12
Identities = 48/51 (94%), Gaps = 0/51 (0%)
Strand=Plus/Minus
Query 64 GCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
|||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 42330399 GCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 42330349
>seq5
Length=304825324
Score = 82.4 bits (90), Expect = 1e-13
Identities = 60/70 (86%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 45 TGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAA 104
|| |||| || || || |||||||||||||||| |||||||| ||||||||||||||
Sbjct 141712458 TGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAA 141712517
Query 105 GTCAGAATCC 114
||||||||||
Sbjct 141712518 GTCAGAATCC 141712527
Score = 78.8 bits (86), Expect = 2e-12
Identities = 67/83 (81%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 32 TGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGC 91
|||| | || | || |||| || || || |||||||||||||||| |||||||| |
Sbjct 94576731 TGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGAC 94576790
Query 92 TGAACGCCTCTAAGTCAGAATCC 114
||||| |||||||||||||||||
Sbjct 94576791 TGAACACCTCTAAGTCAGAATCC 94576813
>seq4
Length=435153693
Score = 80.6 bits (88), Expect = 4e-13
Identities = 87/113 (77%), Gaps = 2/113 (2%)
Strand=Plus/Plus
Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTG 61
||| | ||||||||| | | |||| || ||||| | || | || |||| || || ||
Sbjct 181509617 TACAATAGGAACCGCAGGGT-CAGA-TATTTGGTGTATGTGCTTGGCTGAGGAGCCAATG 181509674
Query 62 CCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| |||||||||| ||| |||||||| ||||| ||||||||||||||||||
Sbjct 181509675 GGGTGAAGCTACCACCTGTGGGATTATGACTGAATGCCTCTAAGTCAGAATCC 181509727
>seq1
Length=748055161
Score = 80.6 bits (88), Expect = 4e-13
Identities = 75/94 (80%), Gaps = 1/94 (1%)
Strand=Plus/Minus
Query 21 TTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGC 80
|||||| | ||||| | || | || |||| || || || ||||||||||||||||
Sbjct 724095403 TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGT 724095345
Query 81 TGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
|||||||| ||||||| ||||||||||||||||
Sbjct 724095344 GGGATTATGACTGAACGGCTCTAAGTCAGAATCC 724095311
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819160193024
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |