Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq4092 98.7 2e-18 seq217 95.1 2e-17 seq2 86.0 1e-14 seq5 82.4 1e-13 seq4 80.6 4e-13 seq1 80.6 4e-13 >seq4092 Length=58290 Score = 98.7 bits (108), Expect = 2e-18 Identities = 93/115 (81%), Gaps = 3/115 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACC-AGGCAG 59 |||||||||||||||| | |||||| | ||||| | || | || |||| || || Sbjct 14716 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAAGGAGCCAA 14773 Query 60 TGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 || |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 14774 TGGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 14828 >seq217 Length=15910 Score = 95.1 bits (104), Expect = 2e-17 Identities = 94/117 (80%), Gaps = 5/117 (4%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGA-ATAATTGGTTTTTGCGGCTGTCTGACCAGGCAG 59 |||||||||||||||| | |||||| || || ||| | || | || |||| || || Sbjct 1472 GTACGAGAGGAACCGCAGG-TTCAGACATTAT-GGTGTATGTGCTTGGCTGAGGAGCCAA 1415 Query 60 TGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTC--TAAGTCAGAATCC 114 || |||||||||||||||| |||||||| ||||||||||| ||||||||||||| Sbjct 1414 TGGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCCGTAAGTCAGAATCC 1358 >seq2 Length=541556283 Score = 86.0 bits (94), Expect = 1e-14 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| | | |||||| | ||||| | || | || |||| || || | Sbjct 13519718 GTACGAGAGGAACCACAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 13519661 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||| ||| |||||||||||| Sbjct 13519660 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACAGCTCCAAGTCAGAATCC 13519607 Score = 78.8 bits (86), Expect = 2e-12 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 64 GCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 42330399 GCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 42330349 >seq5 Length=304825324 Score = 82.4 bits (90), Expect = 1e-13 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 45 TGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAA 104 || |||| || || || |||||||||||||||| |||||||| |||||||||||||| Sbjct 141712458 TGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAA 141712517 Query 105 GTCAGAATCC 114 |||||||||| Sbjct 141712518 GTCAGAATCC 141712527 Score = 78.8 bits (86), Expect = 2e-12 Identities = 67/83 (81%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 32 TGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGC 91 |||| | || | || |||| || || || |||||||||||||||| |||||||| | Sbjct 94576731 TGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGAC 94576790 Query 92 TGAACGCCTCTAAGTCAGAATCC 114 ||||| ||||||||||||||||| Sbjct 94576791 TGAACACCTCTAAGTCAGAATCC 94576813 >seq4 Length=435153693 Score = 80.6 bits (88), Expect = 4e-13 Identities = 87/113 (77%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTG 61 ||| | ||||||||| | | |||| || ||||| | || | || |||| || || || Sbjct 181509617 TACAATAGGAACCGCAGGGT-CAGA-TATTTGGTGTATGTGCTTGGCTGAGGAGCCAATG 181509674 Query 62 CCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||| ||| |||||||| ||||| |||||||||||||||||| Sbjct 181509675 GGGTGAAGCTACCACCTGTGGGATTATGACTGAATGCCTCTAAGTCAGAATCC 181509727 >seq1 Length=748055161 Score = 80.6 bits (88), Expect = 4e-13 Identities = 75/94 (80%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 21 TTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGC 80 |||||| | ||||| | || | || |||| || || || |||||||||||||||| Sbjct 724095403 TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGT 724095345 Query 81 TGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||| ||||||| |||||||||||||||| Sbjct 724095344 GGGATTATGACTGAACGGCTCTAAGTCAGAATCC 724095311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819160193024