Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq6 215 4e-51 seq2 205 7e-48 seq4 91.5 1e-13 seq3 89.7 4e-13 >seq6 Length=292091736 Score = 215 bits (238), Expect = 4e-51 Identities = 595/896 (66%), Gaps = 22/896 (2%) Strand=Plus/Plus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 |||||||| | || || || | |||||||| ||||| | || ||||| | |||||| Sbjct 153785859 GAGAATCCCAGGCGCTTTGTCATCTTCCCCATTGAGTACCATGACATTTGACACATGTAT 153785918 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAAT 61161 || || || || || ||||||||||| | |||||||| ||| | || || || || | Sbjct 153785919 AAGAAAGCAGAGGCCTCCTTCTGGACAGCTGAGGAGGTGGATCTTTCTAAGGATATTCAG 153785978 Query 61162 GACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTT 61221 ||||||| ||| | | || | | ||||| || ||||| | ||||||| Sbjct 153785979 CACTGGGAAACTTTGAAGTCTGACGAGAAGTACTTCATATCTCACGTGTTAGGGTTCTTT 153786038 Query 61222 GCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAAC-GTTTCGCGCAGGAGGTGCA 61280 || || || || || || ||||| |||| ||| | | |||| || || || || || Sbjct 153786039 GCAGCAAGTGATGGCATAGTAAATGAAAATTGGTTGAAGCGGTTTAGC-CAAGAAGTACA 153786097 Query 61281 AGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGA 61340 || | || || || || ||||| |||||||| ||||| |||| ||| || || || Sbjct 153786098 GGTAACAGAAGCCCGCTGCTTCTATGGCTTCCAAATTGCAATGGGAAATAGACATTCTGA 153786157 Query 61341 GATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTT 61400 ||||| ||| |||| || || || | || | ||| | ||| | ||| | || Sbjct 153786158 AATGTATAGTCTTCTTATTGACAC--ATATTAAGGACCCTAAAGAAAGGGAATTTCTCTT 153786215 Query 61401 CAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGAT 61460 ||||||||| || || |||| || || |||||| || |||||||| | ||||| Sbjct 153786216 CAATGCCATTGAAACACTACCTTGTGTTAAAAAGAAAGCTGACTGGGCCTTGA--TGGAT 153786273 Query 61461 CACCAGTACAACG--GCTACATTTGGTGAACG-ATTGCTGGCATTTGCGGTGGTCGAGGG 61517 | |||| | || |||| ||||||||| |||| || ||||| | || || || Sbjct 153786274 --TGGGGACAAAGAAGCAACATATGGTGAACGTGTTGC-AGCTTTTGCAGCAGTTGAAGG 153786330 Query 61518 TGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCC 61577 | || || ||| || ||||| | || || ||| |||||||| || | ||||| Sbjct 153786331 AATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGGCCCAAGAAACGAGGTTTAATGCC 153786390 Query 61578 CGGTCTGACCTTCAGCAATGAGTTGA-TATCACGCGACGAGGGCATGCATTGTGATTTTG 61636 || | || || ||||| || | || || | || ||||| | ||||||||||||| Sbjct 153786391 TGGATTAACTTTTTCAAATGAATTTATTAGCA-GAGATGAGGGTTTACATTGTGATTTTG 153786449 Query 61637 CTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGA 61696 | || | ||||||| | ||||| | || || ||||| ||| || | Sbjct 153786450 CCTGCTTAATGTTCAAAC---ACCTGGTACACAAGCCTTCAGAGGAAAAAGTGAAAGA-A 153786505 Query 61697 TTGTTCGT-GAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCA 61755 || |||| | || || | || |||||||| ||| ||||||| |||||||| || Sbjct 153786506 ATGATCGTCAATGCTGTTAGAATAGAACAGGAGTTTTTGACTGAAGCTTTGCCTGTAAAG 153786565 Query 61756 CTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTG 61815 | || || |||||||| ||||| ||| ||||| |||||||| || ||| | || Sbjct 153786566 TTGATTGGAATGAATTGCACTTTAATGAAGCAATATATCGAATTTGTAGCAGACAGACTT 153786625 Query 61816 TTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGAC 61875 || | || | | | | | ||| | || | |||| | ||||||||| ||||| Sbjct 153786626 ATGTTGGAACTAGCTTTTAGCAAGATTTTTAGAGCAGAAAATCTATTTGATTTTATGGA- 153786684 Query 61876 ATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 || || |||| || || || || || |||||||| | ||||| || ||||| Sbjct 153786685 --TATCTCTTTGGAAGGGAAAACTAACTTCTTCGAGAAGAGAGTAGGAGAATATCA 153786738 >seq2 Length=541556283 Score = 205 bits (226), Expect = 7e-48 Identities = 596/900 (66%), Gaps = 21/900 (2%) Strand=Plus/Plus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 |||||||| || || || | |||||||| ||||| | || ||||||| |||||| Sbjct 435770212 GAGAATCCCAAGCGCTTTGTCATCTTCCCCATTGAGTACCATGACATTTGGCACATGTAT 435770271 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAAT 61161 || || | | || ||||||||||| | |||||||| ||| | || || || ||| | Sbjct 435770272 AAGAAATCATAGGCCTCCTTCTGGACAGCTGAGGAGGTGGATCTTTCTAAGGATATGCAG 435770331 Query 61162 GACTGGG-AGCGTTTA--TCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTC 61218 |||||| ||| || | || | || ||| || ||||| |||||||| || ||| Sbjct 435770332 CACTGGGAAGCTTTGAAGTC-TGAGGAGAAGTAC--TTCATATCTCATGTGTTAGCTTTC 435770388 Query 61219 TTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAAC-GTTTCGCGCAGGAGGT 61277 ||||| || || || || | ||||| ||||| |||| | |||| || || || || Sbjct 435770389 TTTGCAGCAAGTGATGGCATAATAAATGAAAATTTGGTGGAGCGGTTTAGC-CAAGAAGT 435770447 Query 61278 GCAAGTGTC-GGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACT 61336 | || | | || | || || ||||| |||||||| |||| ||||||| | || | Sbjct 435770448 ATAGGTAACAGAAGCCCCGCTGCTTCTATGGCTTCCAAATTGGAATGGAGAGCATACATT 435770507 Query 61337 CGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGAT 61396 | || ||||| | | |||| || || || || || | ||| | ||| | ||| Sbjct 435770508 CTGAAATGTATAATCTTCTTATTGACACTTATATTAAGGACCCTAAAGAAAGGGAATTTC 435770567 Query 61397 TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATT 61456 | ||||||||||| || || |||| || || |||||| || |||||||| | Sbjct 435770568 TCTTCAATGCCATTGAAACACTACCTTGTGTTAAAAAGAAAGCTGACTGGGCCTTATGAT 435770627 Query 61457 GGATCACCAGTACAACG--GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGA 61514 |||| | |||| | || |||| |||||||| | | || ||||| | || || Sbjct 435770628 GGAT--TGGGGACAAAGAAGCAACATATGGTGAACATGTTGTAGCTTTTGCAGCAGTTGA 435770685 Query 61515 GGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTAT 61574 || | || || ||| || ||||| | || || ||| | |||||||| || | || Sbjct 435770686 AGGAATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGGCTCAAGAAACGAGGTTTAAT 435770745 Query 61575 GCCCGGTCTGACCTTCAGCAATG-AGTTGATATCACGCGACGAGGGCATGCATTGTGA-T 61632 ||| || | || || |||| | || || || | || |||| | |||||||| | Sbjct 435770746 GCCTGGATTAACTTTTTCAAATGAACTTATTAGCA-GAGATGAGGATTTACATTGTGATT 435770804 Query 61633 TTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGT 61692 ||||| || | ||||||| | ||||| | || || ||||| ||| Sbjct 435770805 TTTGCCTGCTTAATGTTCAAAC---ACCTGGTTCACAAGCCTTCAGAGGAAAAAGTGAAA 435770861 Query 61693 GAGATTGTTCGTGAG-GCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGT 61751 || ||| |||| || || || | || |||||||| || ||||||| |||||| | Sbjct 435770862 GAAATT-ATCGTCAGTGCTGTTAGAATAGAACAGGAGTTCTTGACTGAACCTTTGCATAT 435770920 Query 61752 CTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCG 61811 | | || || |||||||| ||||| ||| || ||||||||||| || ||| | Sbjct 435770921 AAAATTGATTGGAATGAATTGCACTTTAATGAAGCAATACATTGAATTTGTAGCAGACAG 435770980 Query 61812 TCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCAT 61871 || || | || | ||| | | ||| | || | |||| ||||||||||| || Sbjct 435770981 ACTTATGTTGGAACTAGGTTTTAGCAAGATTTTTAGAGCAGAAAATCCATTTGATTTTAT 435771040 Query 61872 GGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 ||| | || || |||| || || || || || |||||||| | ||||| || ||||| Sbjct 435771041 GGAGAATATCTCTTTGGAAGGGAAAACTAACTTCTTCGAGAACAGAGTAGGAGAATATCA 435771100 >seq4 Length=435153693 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109 || ||||| || || || ||||||| ||||||||| ||||| || | ||||||||| Sbjct 349051507 GTGTACTCTACTATCTCTGTGCACAAATTACTGCATTTGATGGTCCCAAGGTTCTGTTGA 349051448 Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169 || || || ||||| || || ||||| | |||||| || || || ||||| || Sbjct 349051447 TTGCTTTTCCGATTACAGCTGTCTTTGTAGAGCATGTAAGGGGTCCCTGTCTCCGTCTGA 349051388 Query 66170 GACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | ||| || Sbjct 349051387 GACTCAATGATGGCATACCAGAG 349051365 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 66329 TCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGT 66388 || ||||| |||||| ||||| || ||||||||||| |||| || || | ||||| Sbjct 349049292 TCCACACGTTTCATAAAGAGATCTGGGATCCAGAGGGCAAAGAAAAGGTCCCTAGCTCGC 349049233 Query 66389 TGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCA 66447 ||||| || | || ||| || || ||| || ||||| ||||||| ||| |||||| Sbjct 349049232 TGCTCTTCCTTTCCAGTG-TTCTTCTTCAAATCAAGGAATTCAAAGACGTCTAAATGCCA 349049174 Query 66448 TGGTTCCAGGTAGATGGCGAA 66468 |||||||| |||||| || || Sbjct 349049173 TGGTTCCAAGTAGATAGCAAA 349049153 >seq3 Length=527952102 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||||||| || ||||||||||| || ||||||| || |||||||| ||||| |||| Sbjct 368174978 TGGAACGCTTTAGTCAGGAGGTGCAGGTCCCGGAGGCACGCTGTTTCTATGGCTTTCAGA 368174919 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || ||| ||||| | || || |||||||||||| | || || || || || |||| Sbjct 368174918 TTCTCATTGAGAACATTCATTCAGAGATGTACAGTTTGCTAATAGACACCTATATCA 368174862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397543695674240