Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq251 113 7e-23
seq15 113 7e-23
seq7 111 3e-22
seq31 104 4e-20
seq60 100 5e-19
seq428 96.9 6e-18
seq21 91.5 2e-16
seq11 86.0 1e-14
seq1 84.2 3e-14
seq109 80.6 4e-13
>seq251
Length=3772303
Score = 113 bits (124), Expect = 7e-23
Identities = 95/117 (81%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
|||||| |||| | ||||| || ||||| |||||||||| |||||||||||||| ||
Sbjct 2525185 CTATTTGGCAGAGCAGAGTCTCATTTGTTATTGGAATTAACCGGACAAATCACTCCATCA 2525126
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|| |||||| |||||||| ||||||| || | ||||||||| |||||||||||
Sbjct 2525125 GCTTAGAACGTCCATGCACAACCACCCGCAGCACTGAGAAAGAGCCATCAATCTGTC 2525069
>seq15
Length=23419632
Score = 113 bits (124), Expect = 7e-23
Identities = 85/100 (85%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218
||||| || ||||| ||||| ||||||| ||| ||||||| |||||||||| ||| ||||
Sbjct 1148566 GTCTCTTTTGTTATTGGAATCAACCAGATAAACCACTCCATCAACTAAGAATGGCTATGC 1148507
Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||| |||||||||||||||| | ||||||||| ||||
Sbjct 1148506 CCCACTGCCCATAGAATCAAGAAGGGGCTATCAATTTGTC 1148467
>seq7
Length=29334629
Score = 111 bits (122), Expect = 3e-22
Identities = 88/106 (83%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218
|| || ||| | ||| ||||||||||||||||| ||| |||||||||||| || |||||
Sbjct 6248322 GTGTCCTTCATGATCAGAATTAACCAGACAAATGTCTCTACCAACTAAGAAAGGTCATGC 6248381
Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTCCTCCCT 264
| ||||||| | ||||| |||||||||| |||||||||| | |||
Sbjct 6248382 AACACCACCTACAGAATTGAGAAAGAGCTCTCAATCTGTCATTCCT 6248427
>seq31
Length=20058087
Score = 104 bits (114), Expect = 4e-20
Identities = 85/101 (84%), Gaps = 2/101 (2%)
Strand=Plus/Minus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
|||||||||||||| | | |||| | |||||||||||||||||||||||||||||| ||
Sbjct 736566 GTCAGTGTAGCGCGTGCACAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 736508
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115
||| | || |||||| | |||| | ||||||||||||||
Sbjct 736507 CAATC-TCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAG 736468
>seq60
Length=14251744
Score = 100 bits (110), Expect = 5e-19
Identities = 83/100 (83%), Gaps = 1/100 (1%)
Strand=Plus/Plus
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCA-CTCCACCAACTAAGAACGGCCATG 217
|||| |||| ||||| ||||| || ||||||| | ||||||||||||||||| |||||
Sbjct 5123484 GTCTTGTTCTTTATCAGAATTTACAAGACAAAATAGCTCCACCAACTAAGAACAGCCATA 5123543
Query 218 CACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257
|| |||||| || |||| | |||||||||||||| | |||
Sbjct 5123544 CATCACCACACAGAGAACCTAGAAAGAGCTATCAGTTTGT 5123583
>seq428
Length=380454
Score = 96.9 bits (106), Expect = 6e-18
Identities = 77/93 (83%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 165 TTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACC 224
|| ||| || |||||||||||| ||||||||||||||||||||||| |||||| ||||
Sbjct 334342 TTTGTTGTCTGAATTAACCAGATAAATCACTCCACCAACTAAGAACAGCCATGTGACACC 334401
Query 225 ACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257
||||| ||||| ||||| | || | | |||||
Sbjct 334402 ACCCACAGAATTGAGAAAAAACTTTTATTCTGT 334434
>seq21
Length=22353887
Score = 91.5 bits (100), Expect = 2e-16
Identities = 79/98 (81%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCA 219
||| ||| ||||| || ||||||||||||||| ||||||||||||||| |||||||||
Sbjct 21325517 TCTTGTTGGTTATTGGCATTAACCAGACAAATTCTTCCACCAACTAAGAATGGCCATGCA 21325458
Query 220 CCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257
| | |||| | ||||| | |||||| | | ||| |||
Sbjct 21325457 CTATCACCTACAGAATTTAAAAAGAGTTCTGAATATGT 21325420
>seq11
Length=24546903
Score = 86.0 bits (94), Expect = 1e-14
Identities = 78/97 (80%), Gaps = 1/97 (1%)
Strand=Plus/Minus
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218
|||| |||| |||| |||||||| ||||||||| ||| ||||||||||| ||||| |
Sbjct 487056 GTCT-GTTCATTATTGGAATTAATCAGACAAATTGTTCCGCCAACTAAGAATGGCCACCC 486998
Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255
| | | ||||||||| |||||||||||||| |||
Sbjct 486997 ATTAGTATCCATAGAATTGAGAAAGAGCTATCAGTCT 486961
>seq1
Length=40558015
Score = 84.2 bits (92), Expect = 3e-14
Identities = 72/88 (82%), Gaps = 2/88 (2%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| | || ||||| ||| |||| || ||||||||||||||||||||||| |
Sbjct 30865800 CTAGTTAGCATGCTA--GTCTCATTCATTATTGGTATTAACCAGACAAATCACTCCACAA 30865857
Query 202 ACTAAGAACGGCCATGCACCACCACCCA 229
| ||||| ||| ||| |||| ||||||
Sbjct 30865858 ATTAAGACTGGCTATGTACCATCACCCA 30865885
>seq109
Length=9879199
Score = 80.6 bits (88), Expect = 4e-13
Identities = 70/87 (80%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 169 TTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCC 228
|||| ||||||||||| ||| |||||||| |||||| ||| |||| | ||||||||||
Sbjct 9846014 TTATTGGAATTAACCAAACAGATCACTCCCCCAACTTAGACTAGCCACGTACCACCACCC 9845955
Query 229 ATAGAATCAAGAAAGAGCTATCAATCT 255
| |||| ||||| || ||||||||
Sbjct 9845954 AAAGAACTGAGAAACAGTCATCAATCT 9845928
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796785287586
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |