Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq251 113 7e-23 seq15 113 7e-23 seq7 111 3e-22 seq31 104 4e-20 seq60 100 5e-19 seq428 96.9 6e-18 seq21 91.5 2e-16 seq11 86.0 1e-14 seq1 84.2 3e-14 seq109 80.6 4e-13 >seq251 Length=3772303 Score = 113 bits (124), Expect = 7e-23 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||| |||| | ||||| || ||||| |||||||||| |||||||||||||| || Sbjct 2525185 CTATTTGGCAGAGCAGAGTCTCATTTGTTATTGGAATTAACCGGACAAATCACTCCATCA 2525126 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || |||||| |||||||| ||||||| || | ||||||||| ||||||||||| Sbjct 2525125 GCTTAGAACGTCCATGCACAACCACCCGCAGCACTGAGAAAGAGCCATCAATCTGTC 2525069 >seq15 Length=23419632 Score = 113 bits (124), Expect = 7e-23 Identities = 85/100 (85%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||| || ||||| ||||| ||||||| ||| ||||||| |||||||||| ||| |||| Sbjct 1148566 GTCTCTTTTGTTATTGGAATCAACCAGATAAACCACTCCATCAACTAAGAATGGCTATGC 1148507 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||| |||||||||||||||| | ||||||||| |||| Sbjct 1148506 CCCACTGCCCATAGAATCAAGAAGGGGCTATCAATTTGTC 1148467 >seq7 Length=29334629 Score = 111 bits (122), Expect = 3e-22 Identities = 88/106 (83%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 || || ||| | ||| ||||||||||||||||| ||| |||||||||||| || ||||| Sbjct 6248322 GTGTCCTTCATGATCAGAATTAACCAGACAAATGTCTCTACCAACTAAGAAAGGTCATGC 6248381 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTCCTCCCT 264 | ||||||| | ||||| |||||||||| |||||||||| | ||| Sbjct 6248382 AACACCACCTACAGAATTGAGAAAGAGCTCTCAATCTGTCATTCCT 6248427 >seq31 Length=20058087 Score = 104 bits (114), Expect = 4e-20 Identities = 85/101 (84%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||||||| | | |||| | |||||||||||||||||||||||||||||| || Sbjct 736566 GTCAGTGTAGCGCGTGCACAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 736508 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||| | || |||||| | |||| | |||||||||||||| Sbjct 736507 CAATC-TCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAG 736468 >seq60 Length=14251744 Score = 100 bits (110), Expect = 5e-19 Identities = 83/100 (83%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCA-CTCCACCAACTAAGAACGGCCATG 217 |||| |||| ||||| ||||| || ||||||| | ||||||||||||||||| ||||| Sbjct 5123484 GTCTTGTTCTTTATCAGAATTTACAAGACAAAATAGCTCCACCAACTAAGAACAGCCATA 5123543 Query 218 CACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 || |||||| || |||| | |||||||||||||| | ||| Sbjct 5123544 CATCACCACACAGAGAACCTAGAAAGAGCTATCAGTTTGT 5123583 >seq428 Length=380454 Score = 96.9 bits (106), Expect = 6e-18 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 165 TTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACC 224 || ||| || |||||||||||| ||||||||||||||||||||||| |||||| |||| Sbjct 334342 TTTGTTGTCTGAATTAACCAGATAAATCACTCCACCAACTAAGAACAGCCATGTGACACC 334401 Query 225 ACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 ||||| ||||| ||||| | || | | ||||| Sbjct 334402 ACCCACAGAATTGAGAAAAAACTTTTATTCTGT 334434 >seq21 Length=22353887 Score = 91.5 bits (100), Expect = 2e-16 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCA 219 ||| ||| ||||| || ||||||||||||||| ||||||||||||||| ||||||||| Sbjct 21325517 TCTTGTTGGTTATTGGCATTAACCAGACAAATTCTTCCACCAACTAAGAATGGCCATGCA 21325458 Query 220 CCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 | | |||| | ||||| | |||||| | | ||| ||| Sbjct 21325457 CTATCACCTACAGAATTTAAAAAGAGTTCTGAATATGT 21325420 >seq11 Length=24546903 Score = 86.0 bits (94), Expect = 1e-14 Identities = 78/97 (80%), Gaps = 1/97 (1%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||| |||| |||| |||||||| ||||||||| ||| ||||||||||| ||||| | Sbjct 487056 GTCT-GTTCATTATTGGAATTAATCAGACAAATTGTTCCGCCAACTAAGAATGGCCACCC 486998 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255 | | | ||||||||| |||||||||||||| ||| Sbjct 486997 ATTAGTATCCATAGAATTGAGAAAGAGCTATCAGTCT 486961 >seq1 Length=40558015 Score = 84.2 bits (92), Expect = 3e-14 Identities = 72/88 (82%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | || ||||| ||| |||| || ||||||||||||||||||||||| | Sbjct 30865800 CTAGTTAGCATGCTA--GTCTCATTCATTATTGGTATTAACCAGACAAATCACTCCACAA 30865857 Query 202 ACTAAGAACGGCCATGCACCACCACCCA 229 | ||||| ||| ||| |||| |||||| Sbjct 30865858 ATTAAGACTGGCTATGTACCATCACCCA 30865885 >seq109 Length=9879199 Score = 80.6 bits (88), Expect = 4e-13 Identities = 70/87 (80%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 169 TTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCC 228 |||| ||||||||||| ||| |||||||| |||||| ||| |||| | |||||||||| Sbjct 9846014 TTATTGGAATTAACCAAACAGATCACTCCCCCAACTTAGACTAGCCACGTACCACCACCC 9845955 Query 229 ATAGAATCAAGAAAGAGCTATCAATCT 255 | |||| ||||| || |||||||| Sbjct 9845954 AAAGAACTGAGAAACAGTCATCAATCT 9845928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796785287586