Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq233 352 5e-95 seq209 170 3e-40 seq27 152 9e-35 seq231 149 1e-33 seq6 147 4e-33 seq154 140 6e-31 seq94 140 6e-31 seq285 138 2e-30 seq5 102 1e-19 seq117 89.7 9e-16 seq1325 84.2 4e-14 seq96 84.2 4e-14 seq32 84.2 4e-14 seq102 82.4 1e-13 seq2 82.4 1e-13 seq279 80.6 5e-13 seq187 80.6 5e-13 seq269 73.4 7e-11 seq131 73.4 7e-11 >seq233 Length=4507161 Score = 352 bits (390), Expect = 5e-95 Identities = 256/295 (87%), Gaps = 1/295 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | | | || ||||||||||||||||||||||||||||| Sbjct 3042921 TACTGAGCAGGATTACTATGGCGACAACCCCTCATCAGTAGGGTAAAACTAACCTGTCTC 3042862 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 3042861 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 3042802 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 3042801 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 3042742 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 3042741 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 3042682 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | ||| | | || | |||||||| ||||| | |||||| ||| |||||||| Sbjct 3042681 TAAAACCCCAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTCA 3042627 >seq209 Length=5418910 Score = 170 bits (188), Expect = 3e-40 Identities = 134/159 (84%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||| |||||||||| ||||||| |||||||| ||||| || Sbjct 3688981 TCATCAGTAGGGTAAAACTAACTTGTCTCATGATGGTCTAAGGCCAGCTCATGTTCCATA 3688922 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||| ||||||||||||||||| ||| | |||||||||| ||| ||| | |||| | Sbjct 3688921 TTAATGGGTGAACAATCCAACTCTTGGTGGATTCTGCTTCACAGTGACAGGGAAAGCCAA 3688862 Query 151 CATCGAAGGATCA-AAAAGCAACGTCGCTATGAACGCTT 188 ||| ||||||||| |||||||| || |||||||| |||| Sbjct 3688861 CATTGAAGGATCAAAAAAGCAATGTTGCTATGAATGCTT 3688823 >seq27 Length=21018852 Score = 152 bits (168), Expect = 9e-35 Identities = 194/264 (73%), Gaps = 5/264 (2%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||| || |||||||||||||||||||||| | | | | | |||||| ||| |||| Sbjct 12668122 TCATCAACAGAGTAAAACTAACCTGTCTCATGATGATTTGAGCTAAGCTCATGTTTCCTA 12668063 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||| || || ||||||||| | || |||||||||| |||||||||||| || Sbjct 12668062 TTAATGAGTAAACAATCCAGTGTTTGGTCGATTCTGCTTCCCGATGATAGGAAGATTTGA 12668003 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 || ||| |||||||| || | ||| |||| | || |||||||||| ||| ||||| Sbjct 12668002 ACTCAAAGAATCAAAAATCA---TTGCTTTGAAGGATTAGCTGCCACAAACCATGTATCC 12667946 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 || || ||||||||||| | || | || |||| || | || | ||||||| ||| Sbjct 12667945 CTATGATAACTTTTCTGATA-CTTTCCACTTAAATCTCAAAGGTCAGAAGGATCATGAGG 12667887 Query 271 CCACACTTTCATGGTTTGTATTCA 294 || ||||||| || | |||||| Sbjct 12667886 CC-TACTTTCACAGTCTATATTCA 12667864 >seq231 Length=4540380 Score = 149 bits (164), Expect = 1e-33 Identities = 174/234 (74%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||| ||| ||||||| | | ||||||||||| || ||||||||||| ||| ||| Sbjct 813953 TCATCGGTACAGTAAAACCAGCTTGTCTCATGACAGTTTAAACCCAGCTGGAATTCTCTA 814012 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||| | | ||||||||| ||| || || |||||| || || | ||||||| | Sbjct 814013 TTAGTAGTGGGACAATCCAATTCTTGATGAGTTATGCTTCATAATAATGGAAAGAGCCAA 814072 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 | ||||||||| |||||| ||| || || | |||||||||| |||| |||||||| Sbjct 814073 TACTGAAGGATCAGAAAGCAGTGTCTCT-TGCATGCTTGGCTGCTTCAAGTCAGTTATCT 814131 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATC 264 |||| |||| | ||||| | |||| || |||||| || | || | ||| ||| Sbjct 814132 CTGTTGTAATTCTTCTGACTGCTCTTGCTTCAAATCTCAAAGGTCAGAAGAATC 814185 >seq6 Length=29993169 Score = 147 bits (162), Expect = 4e-33 Identities = 171/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 66 GTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCT 125 ||||||| | |||||| |||| ||||||||||||||| ||| ||| |||| |||||||| Sbjct 4626162 GTCTAAATCTAGCTCATGTTCTCTATTAGTGGGTGAATAATACAATGCTTGGCGAATTCT 4626221 Query 126 GCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACG 185 ||||| ||||||||||||||| | || |||| || ||||| ||| ||||||| | Sbjct 4626222 GCTTCATAATGATAGGAAGAGCCAATATTGAAGAATTAAAAAATGGAGTCACTATGAATG 4626281 Query 186 CTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAAT 245 || || ||| ||||||||||| ||| | ||||| ||||| || ||| || | ||| Sbjct 4626282 GTTAGCCACCATAAGCCAGTTATTTCTGAGATAACTGTTCTGACATCTCCTGCTTAAAAC 4626341 Query 246 TTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 || | || | || || | ||||| ||||| || || ||||| || Sbjct 4626342 CTCAAAGGCC---AGAATTGTGAGGCC-TACTTTAATAGTCTGTATCCA 4626386 >seq154 Length=7791096 Score = 140 bits (154), Expect = 6e-31 Identities = 109/130 (84%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 |||||||||| | |||||||||||||||| | | |||||| |||||||| | ||||||| Sbjct 5888229 CATCAGTAGGTTTAAACTAACCTGTCTCACGGCAGTCTAATCCCAGCTCGAGCTCCCTAT 5888288 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 ||| |||||||||||||| ||||| |||||||||||| |||| | ||||||| ||| Sbjct 5888289 TAGCGGGTGAACAATCCAGCGCTTGGGGAATTCTGCTTCACAATGACAAGAAGAGCTGAC 5888348 Query 152 ATCGAAGGAT 161 || ||||||| Sbjct 5888349 ATTGAAGGAT 5888358 >seq94 Length=10919598 Score = 140 bits (154), Expect = 6e-31 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 35 CAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAG 94 ||||| |||||| || ||| |||| |||| ||||||| ||||| | |||||| | || Sbjct 5820713 CAGTAAGGTAAAGCTGCCCTTTCTCGTGACTGTCTAAATTCAGCTTGCATTCCCTGTGAG 5820772 Query 95 TGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATC 154 |||| |||||||| ||| || |||||||||||| ||| |||| ||| || | Sbjct 5820773 TGGGCGAACAATCTAACATTTGGTGAATTCTGCTTCTCATTGAGAGGATGAGGTGATAGA 5820832 Query 155 GAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGT 214 ||||||||||||||||| || ||||||| | |||| |||| | |||||||| ||| Sbjct 5820833 GAAGGATCAAAAAGCAATATCTCTATGAATGTGTGGCCACCACCAATCAGTTATCACTGA 5820892 Query 215 GGTAACTTTTCTGGCAC 231 | ||| ||||||| ||| Sbjct 5820893 GATAATTTTTCTGACAC 5820909 >seq285 Length=2929481 Score = 138 bits (152), Expect = 2e-30 Identities = 126/159 (79%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 136 GATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCC 195 ||||| ||||||| |||| ||||||||||| || || || |||||||| |||| |||| Sbjct 1148432 GATAGAAAGAGCCAACATTGAAGGATCAAAGAGTGACTTCACTATGAACAGTTGGTTGCC 1148373 Query 196 ACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGAC 255 ||||||||| ||| ||| |||||||||||||| |||||| || | ||| | | || | Sbjct 1148372 ACAAGCCAGATATTCCTCTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCCAAAGGTC 1148313 Query 256 TAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 ||||||| ||||| ||||||||||| |||||||| Sbjct 1148312 AGAAGGATCATGAGGCCCTACTTTCATGGTGTGTATTCA 1148274 >seq5 Length=36077823 Score = 102 bits (112), Expect = 1e-19 Identities = 186/269 (69%), Gaps = 9/269 (3%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||||||||||| ||||||| | |||| |||| | ||| | Sbjct 14313008 TCATCAGTAGGGTAAAACTAAGTTGTCTCACAATAACCTAATTGAAGCTTG-GATCCTTC 14313066 Query 91 TTAGTGG-----GTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGA 145 || | || | || |||||| ||| ||| ||| ||| | |||| | ||||| Sbjct 14313067 TTGGGGGAGGGAGGGAGGAATCCACAGCTGGT-GAAATCTACTTTGCAATGACAAGAAGA 14313125 Query 146 GCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGT 205 |||| ||||| |||||| ||| || ||||| || ||||| | |||||| || | Sbjct 14313126 ATTCACATGAAAGGACCAAAAATCAAAGTTGCTATTAATTCTTGGATATCACAAGTCACT 14313185 Query 206 TATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCG 265 |||| |||| |||||||||||| ||||||| | | |||| || | || | |||| ||| Sbjct 14313186 TATCTCTGTAGTAACTTTTCTGACACCTCTTG--TAAAATCTCAAAGGTCAAAAGAATCA 14313243 Query 266 ATAGGCCACACTTTCATGGTTTGTATTCA 294 || || ||||| || |||||||| Sbjct 14313244 TGAGACCCAGCTTTCTCAGTCTGTATTCA 14313272 >seq117 Length=9621972 Score = 89.7 bits (98), Expect = 9e-16 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||| ||||||||||||| || ||||||| || || | |||||||||| || | Sbjct 645497 TCATCAGCTGGGTAAAACTAACATGGCTCATGATGGGCTGATGGAAGCTCACGTTGCCCA 645438 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 || |||| | || |||||| ||| ||||| |||||| | ||| |||||| || || Sbjct 645437 TTTATGGGAGGTCAGTCCAACTCTTGGTGAATTTTGCTTCCCTGTGAGAGGAAGGGCTGA 645378 Query 151 CATC 154 |||| Sbjct 645377 CATC 645374 >seq1325 Length=22401 Score = 84.2 bits (92), Expect = 4e-14 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG-CCACAAGCCAGTTATCC 210 || |||||| ||||||| | || ||||||| ||||||| ||||||||||||||||| Sbjct 20381 ATTGAAGGACCAAAAAGTGATATCACTATGAATGCTTGGCCCACCACAAGCCAGTTATCC 20322 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||| | | ||||| || ||| || | | ||| || | | | |||||| | | | Sbjct 20321 CTGCAGCATCTTTTATGACACTTCCTTCTTAAAACCTCAAAAGTCAGAAGGATTGTGAAG 20262 Query 271 CCACACTTTCATGGT-TTGTATTCA 294 || |||||||||||| || |||||| Sbjct 20261 CCCCACTTTCATGGTCTTATATTCA 20237 >seq96 Length=10882383 Score = 84.2 bits (92), Expect = 4e-14 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG-CCACAAGCCAGTTATCC 210 || |||||| ||||||| | || ||||||| ||||||| ||||||||||||||||| Sbjct 10197209 ATTGAAGGACCAAAAAGTGATATCACTATGAATGCTTGGCCCACCACAAGCCAGTTATCC 10197150 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||| | | ||||| || ||| || | | ||| || | | | |||||| | | | Sbjct 10197149 CTGCAGCATCTTTTATGACACTTCCTTCTTAAAACCTCAAAAGTCAGAAGGATTGTGAAG 10197090 Query 271 CCACACTTTCATGGT-TTGTATTCA 294 || |||||||||||| || |||||| Sbjct 10197089 CCCCACTTTCATGGTCTTATATTCA 10197065 >seq32 Length=19597799 Score = 84.2 bits (92), Expect = 4e-14 Identities = 140/200 (70%), Gaps = 18/200 (9%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAA------CCCAGCTCACGTTC 86 ||| || ||||||||||| ||||| | |||||||| || ||||| | | | Sbjct 5938324 ATCTGTTAGGTAAAACTAATGAACCTCATAATGGTCTAAATTTAAACCTAGCTCCCAT-C 5938266 Query 87 CCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAG 146 |||||||||||| |||||| ||| ||||| || ||| ||| ||||||| Sbjct 5938265 TCTATTAGTGGGTCAACAAT------CTTGATGAATTTTGTTTC----TGAAAGGAAGAA 5938216 Query 147 CCGACATCGAAGGATC-AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGT 205 | |||||| ||| ||| |||||||| | ||| || | ||||| ||| || ||||| Sbjct 5938215 CAGACATCAAAGAATCAAAAAAGCATTGATGCTGCAAATGATTGGCCACCATAAACCAGT 5938156 Query 206 TATCCCTGTGGTAACTTTTC 225 || | |||| ||||||||| Sbjct 5938155 TAGTCTTGTGATAACTTTTC 5938136 >seq102 Length=10610630 Score = 82.4 bits (90), Expect = 1e-13 Identities = 79/100 (79%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 30 GTCAT-CAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCC 88 ||||| || |||| ||||| ||||||||||||||| | | ||||| ||||| | || || Sbjct 5127740 GTCATTCAATAGGATAAAATTAACCTGTCTCATGAAGATTTAAACTCAGCTAGCATTTCC 5127799 Query 89 TATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCT 128 || | |||| |||||| |||| | |||| ||||||| || Sbjct 5127800 TAATGGTGGATGAACATTCCAGCACTTAGTGAATTCTACT 5127839 >seq2 Length=39914628 Score = 82.4 bits (90), Expect = 1e-13 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 ||||| ||||||||||| || |||||||||||||||||||||||||| ||||||| || Sbjct 32252860 TGAACACTTGGCTGCCATGAGTCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCT 32252919 Query 240 TCAAA 244 | ||| Sbjct 32252920 TAAAA 32252924 >seq279 Length=3167524 Score = 80.6 bits (88), Expect = 5e-13 Identities = 65/79 (82%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||| |||||||||| ||||||||| ||| | |||||| || || || |||||| Sbjct 1429225 TCATCAGCAGGGTAAAACCAACCTGTCTAATGCCAGTCTAATTCCCACTTACAATCCCTA 1429166 Query 91 TTAGTGGGTGAACAATCCA 109 ||||| ||| ||||||||| Sbjct 1429165 TTAGTAGGTAAACAATCCA 1429147 >seq187 Length=6188305 Score = 80.6 bits (88), Expect = 5e-13 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 161 TCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAAC 220 ||||||||| | ||| |||||| | |||| | |||| |||||||||||||||| ||||| Sbjct 3932268 TCAAAAAGCTAGGTCTGTATGAATGATTGGATACCACCAGCCAGTTATCCCTGTAGTAAC 3932209 Query 221 TTTTCTGGCACCTC 234 |||||| |||||| Sbjct 3932208 TTTTCTAACACCTC 3932195 >seq269 Length=3423423 Score = 73.4 bits (80), Expect = 7e-11 Identities = 67/85 (79%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 138 TAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCAC 197 ||| | ||||| | | |||||||||||||||| ||| ||||| | ||||||||| || Sbjct 831849 TAGCAGGAGCCAATACGGAAGGATCAAAAAGCACAGTCACTATGGAAACTTGGCTGCTAC 831908 Query 198 AAGCCAGTTATCCCTGTGGTAACTT 222 |||||||| || ||||| ||||| Sbjct 831909 TTGCCAGTTACCCTTGTGGCAACTT 831933 >seq131 Length=8971046 Score = 73.4 bits (80), Expect = 7e-11 Identities = 51/58 (88%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 177 CTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 |||||||| |||||| |||||||||||||| ||||||| ||||||||||| ||||| Sbjct 5593451 CTATGAACCCTTGGCCACCACAAGCCAGTTACCCCTGTGATAACTTTTCTGATACCTC 5593508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854383715136