Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq10 179 1e-42 seq31 120 9e-25 seq94 114 4e-23 seq7 91.5 4e-16 seq133 78.8 3e-12 >seq10 Length=25956607 Score = 179 bits (198), Expect = 1e-42 Identities = 139/164 (85%), Gaps = 5/164 (3%) Strand=Plus/Minus Query 345 CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATC----AAATA 400 ||| ||||||||||||||||||||| |||||||| |||| | || | | | ||| Sbjct 6399367 CATATATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGGGAGCGAGCGACCAAAGG 6399308 Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGA 460 ||| ||||||||||||||||||||||||||||||||||||| | | | |||||||| Sbjct 6399307 AACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGTGTACTTAGA 6399248 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| |||||||||| Sbjct 6399247 CATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 6399205 >seq31 Length=20058087 Score = 120 bits (132), Expect = 9e-25 Identities = 128/167 (77%), Gaps = 3/167 (2%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTA--TTTATTGTCACTA 57 ||||| |||||||||||| ||| | |||| || ||| | || ||| |||||| || Sbjct 6727781 GTACTTATTCCAATTACAGCACCTCGAAAGCATTCTATATTATTATTTTTTTTGTCATTA 6727840 Query 58 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117 ||||||| || ||| |||||| ||| | ||||| ||||| |||||||||| |||| Sbjct 6727841 CCTCCCCAGGTTAGGAGTGGGTAGTTTTCATGCCTGTTGCCTCCCTTGGATGTAATAGCT 6727900 Query 118 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACC 164 ||||||| | || |||||| ||||| |||||| ||||| |||| || Sbjct 6727901 GTTTCTCGGACTTCCTCTCTAGAATCAAACCCTGATTCCTCGTTTCC 6727947 >seq94 Length=10919598 Score = 114 bits (126), Expect = 4e-23 Identities = 158/215 (73%), Gaps = 7/215 (3%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||| |||||| | || |||||| |||| |||| ||||| | ||| | | Sbjct 4524351 ACTCATTCTCATTACATGGCCTTGAAAGAGTCCTGCATCATTATTTTTCATCA-TCTTGC 4524409 Query 62 CCCGTGTCGGGATTGGGTAATTT-GCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 | | | | || |||||| ||| || ||||||||||||||||||||| ||||||| || Sbjct 4524410 CTCAGGGCAAGAGTGGGTATTTTTGCATGCCTGCTGCCTTCCTTGGATGGGGTAGCCCTT 4524469 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACC--CGTTGATACCATGG 178 ||||||| |||||| | |||||| ||| | ||| ||| ||||| | | | ||||||| Sbjct 4524470 TCTCAGGGTCCCTCCCTGGAATCAAACTCCAATGCCC--TTACCCTCATGGTCACCATGG 4524527 Query 179 TAGGCCACTATCCTACCATCGAAAGTTGATAGGGC 213 | ||| ||||| | |||||||||||||| Sbjct 4524528 TGGGCTGGGCAAGTACCACCAAAAGTTGATAGGGC 4524562 >seq7 Length=29334629 Score = 91.5 bits (100), Expect = 4e-16 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 79 TAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCG 138 |||||||| | ||||||||||| | ||||||||||| |||||||||||||||| || | Sbjct 13676122 TAATTTGCACATTTGCTGCCTTCCATAGATGTGGTAGCTGTTTCTCAGGCTCCCTTTCTG 13676063 Query 139 GAATCGAACCCTAATTCCCCGTT 161 |||| |||| || |||||| ||| Sbjct 13676062 GAATTGAACACTGATTCCCTGTT 13676040 >seq133 Length=8743187 Score = 78.8 bits (86), Expect = 3e-12 Identities = 85/110 (77%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| ||| |||| | ||||||||| ||||| | | ||| ||| ||| | |||| Sbjct 4173854 CAAAGGAACCATAATTAATTTAATGATCCATTTGTAATTTTACTATATTGGCCATGTATA 4173913 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||| ||||||||||||| || ||||| ||||||||| ||| |||||| Sbjct 4173914 TTTAGATATGCATGGCTTAACCTCTGAGATAAGCATATG-CTA-TGGCAG 4173961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510371211776