Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq10 179 1e-42
seq31 120 9e-25
seq94 114 4e-23
seq7 91.5 4e-16
seq133 78.8 3e-12
>seq10
Length=25956607
Score = 179 bits (198), Expect = 1e-42
Identities = 139/164 (85%), Gaps = 5/164 (3%)
Strand=Plus/Minus
Query 345 CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATC----AAATA 400
||| ||||||||||||||||||||| |||||||| |||| | || | | | |||
Sbjct 6399367 CATATATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGGGAGCGAGCGACCAAAGG 6399308
Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGA 460
||| ||||||||||||||||||||||||||||||||||||| | | | ||||||||
Sbjct 6399307 AACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGTGTACTTAGA 6399248
Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 6399247 CATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 6399205
>seq31
Length=20058087
Score = 120 bits (132), Expect = 9e-25
Identities = 128/167 (77%), Gaps = 3/167 (2%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTA--TTTATTGTCACTA 57
||||| |||||||||||| ||| | |||| || ||| | || ||| |||||| ||
Sbjct 6727781 GTACTTATTCCAATTACAGCACCTCGAAAGCATTCTATATTATTATTTTTTTTGTCATTA 6727840
Query 58 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117
||||||| || ||| |||||| ||| | ||||| ||||| |||||||||| ||||
Sbjct 6727841 CCTCCCCAGGTTAGGAGTGGGTAGTTTTCATGCCTGTTGCCTCCCTTGGATGTAATAGCT 6727900
Query 118 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACC 164
||||||| | || |||||| ||||| |||||| ||||| |||| ||
Sbjct 6727901 GTTTCTCGGACTTCCTCTCTAGAATCAAACCCTGATTCCTCGTTTCC 6727947
>seq94
Length=10919598
Score = 114 bits (126), Expect = 4e-23
Identities = 158/215 (73%), Gaps = 7/215 (3%)
Strand=Plus/Plus
Query 3 ACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||||||| |||||| | || |||||| |||| |||| ||||| | ||| | |
Sbjct 4524351 ACTCATTCTCATTACATGGCCTTGAAAGAGTCCTGCATCATTATTTTTCATCA-TCTTGC 4524409
Query 62 CCCGTGTCGGGATTGGGTAATTT-GCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
| | | | || |||||| ||| || ||||||||||||||||||||| ||||||| ||
Sbjct 4524410 CTCAGGGCAAGAGTGGGTATTTTTGCATGCCTGCTGCCTTCCTTGGATGGGGTAGCCCTT 4524469
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACC--CGTTGATACCATGG 178
||||||| |||||| | |||||| ||| | ||| ||| ||||| | | | |||||||
Sbjct 4524470 TCTCAGGGTCCCTCCCTGGAATCAAACTCCAATGCCC--TTACCCTCATGGTCACCATGG 4524527
Query 179 TAGGCCACTATCCTACCATCGAAAGTTGATAGGGC 213
| ||| ||||| | ||||||||||||||
Sbjct 4524528 TGGGCTGGGCAAGTACCACCAAAAGTTGATAGGGC 4524562
>seq7
Length=29334629
Score = 91.5 bits (100), Expect = 4e-16
Identities = 70/83 (84%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 79 TAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCG 138
|||||||| | ||||||||||| | ||||||||||| |||||||||||||||| || |
Sbjct 13676122 TAATTTGCACATTTGCTGCCTTCCATAGATGTGGTAGCTGTTTCTCAGGCTCCCTTTCTG 13676063
Query 139 GAATCGAACCCTAATTCCCCGTT 161
|||| |||| || |||||| |||
Sbjct 13676062 GAATTGAACACTGATTCCCTGTT 13676040
>seq133
Length=8743187
Score = 78.8 bits (86), Expect = 3e-12
Identities = 85/110 (77%), Gaps = 2/110 (2%)
Strand=Plus/Plus
Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454
|||| ||| |||| | ||||||||| ||||| | | ||| ||| ||| | ||||
Sbjct 4173854 CAAAGGAACCATAATTAATTTAATGATCCATTTGTAATTTTACTATATTGGCCATGTATA 4173913
Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||| ||||||||||||| || ||||| ||||||||| ||| ||||||
Sbjct 4173914 TTTAGATATGCATGGCTTAACCTCTGAGATAAGCATATG-CTA-TGGCAG 4173961
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510371211776
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |