Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17]
35,974 sequences; 3,174,693,010 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq53 127 3e-27
seq6823 123 4e-26
seq15971 120 5e-25
seq15277 80.6 4e-13
seq6940 78.8 1e-12
>seq53
Length=4446849
Score = 127 bits (140), Expect = 3e-27
Identities = 176/239 (74%), Gaps = 13/239 (5%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||| |||||| || |||| | ||||| ||||| | | |||||| |||||| |
Sbjct 3746283 GTACAAAGGACAGGGATTTAATCAAAGGAAGCTT-ATGACCCACACTTACTGGGAATT-C 3746226
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAAAG 116
|| ||| | | || ||||||||| | ||||||||||| |||| ||||| |
Sbjct 3746225 CTTGTTCATGGGTAATAATTGCAATCCCCAATCCCCATCAC----AAATGTGGTTCAACG 3746170
Query 117 A-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACA-TCAGTGTAGCGCGC 174
||||||| |||| |||| ||| | || || | || |||||||||||||
Sbjct 3746169 GGTTACCCGTGCCTGCCGGCGTAGGGTAGGCACACGGCTGAGCCACTCAGTGTAGCGCGG 3746110
Query 175 GTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|||| |||| | |||||||||| ||||||||||||||||||| ||||| || |||||
Sbjct 3746109 GTGCAGCCCTGGACATCTAAGGACATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 3746052
>seq6823
Length=3687145
Score = 123 bits (136), Expect = 4e-26
Identities = 171/234 (73%), Gaps = 4/234 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||| || ||||||| || || ||||| ||| |||||| ||||| |
Sbjct 2374313 GTACAAAGGGCAGGGATTTAATCAACGCAAGGTT-ATGACCCGCACTTACTGAGAATT-C 2374370
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
||| || | || ||||||||| | ||||||||||||| ||||| | ||
Sbjct 2374371 CTCATTCTTGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 2374430
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||||| |||| ||| ||| | || | ||| |||||||||| || |||
Sbjct 2374431 ACCCGCGCCTGCCGGTGTAGGGTAGGCACACACTGAGCCAGTCAGTGTAGCAAGCATGCA 2374490
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|||| | |||||||||||||||||||| ||||||||| ||||| || |||||
Sbjct 2374491 GCCCTGGACATCTAAGGGCATCACAGATCTGTTATTG-CTCAATCTCGGGTGGC 2374543
>seq15971
Length=175860
Score = 120 bits (132), Expect = 5e-25
Identities = 163/222 (73%), Gaps = 18/222 (8%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||| ||||||| || ||||||| ||||| ||||||||| |||||| |||||| |
Sbjct 17931 GTACAAAGGACAGGGACTTAATCAACGCAAGCTT-ATGACTCGCACTTACTGGGAATT-C 17874
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAAAG 116
|||||| | || ||||||||| ||||||||||| |||| ||||| |
Sbjct 17873 CTCGTTCATATGGAATAATTGCAATCCCTGATCCCCATCAC----AAATGGGGTTCAATG 17818
Query 117 A-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGT--TGAATACATCAGTGTAGCGCG 173
|||| || ||||| | || ||||| | ||| ||| ||||||||| ||
Sbjct 17817 GGTTACTCGCACCTGCC-----AGTGGATAGGCACGTGCTGAGCCAGTCAGTGTAGGGCA 17763
Query 174 CGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATT 215
| | |||| | ||||||||||||||||||||||| |||||
Sbjct 17762 CATTTAGCCCTGGACATCTAAGGGCATCACAGACCTATTATT 17721
>seq15277
Length=881827
Score = 80.6 bits (88), Expect = 4e-13
Identities = 80/101 (79%), Gaps = 2/101 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||| ||||||||||||| || ||||||| ||||| || | || |||||| |||| |||
Sbjct 92530 GTATAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATAATCTGCACTTACTGGGAA-TTC 92587
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCAC 101
|||||| | || || ||||||||| | |||||||||||
Sbjct 92588 CTCGTTCATGAGGAATAATTGCAATTTCCGATCCCCATCAC 92628
>seq6940
Length=186021
Score = 78.8 bits (86), Expect = 1e-12
Identities = 71/87 (82%), Gaps = 2/87 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || |||| || ||||| ||||| ||| |||||| |||| |||
Sbjct 175894 GTACAAAGGGCAGGGACTTAATCAAGGCAAGCTT-ATGACCCGCACTTACTGGGAA-TTC 175951
Query 61 CTCGTTGAAGACCAACAATTGCAATGA 87
||| || | | || |||||||||||
Sbjct 175952 CTCATTCATGGGGAATAATTGCAATGA 175978
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751737929410
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |