Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq53 127 3e-27 seq6823 123 4e-26 seq15971 120 5e-25 seq15277 80.6 4e-13 seq6940 78.8 1e-12 >seq53 Length=4446849 Score = 127 bits (140), Expect = 3e-27 Identities = 176/239 (74%), Gaps = 13/239 (5%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||| |||||| || |||| | ||||| ||||| | | |||||| |||||| | Sbjct 3746283 GTACAAAGGACAGGGATTTAATCAAAGGAAGCTT-ATGACCCACACTTACTGGGAATT-C 3746226 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAAAG 116 || ||| | | || ||||||||| | ||||||||||| |||| ||||| | Sbjct 3746225 CTTGTTCATGGGTAATAATTGCAATCCCCAATCCCCATCAC----AAATGTGGTTCAACG 3746170 Query 117 A-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACA-TCAGTGTAGCGCGC 174 ||||||| |||| |||| ||| | || || | || ||||||||||||| Sbjct 3746169 GGTTACCCGTGCCTGCCGGCGTAGGGTAGGCACACGGCTGAGCCACTCAGTGTAGCGCGG 3746110 Query 175 GTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| |||| | |||||||||| ||||||||||||||||||| ||||| || ||||| Sbjct 3746109 GTGCAGCCCTGGACATCTAAGGACATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 3746052 >seq6823 Length=3687145 Score = 123 bits (136), Expect = 4e-26 Identities = 171/234 (73%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||| || ||||||| || || ||||| ||| |||||| ||||| | Sbjct 2374313 GTACAAAGGGCAGGGATTTAATCAACGCAAGGTT-ATGACCCGCACTTACTGAGAATT-C 2374370 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 ||| || | || ||||||||| | ||||||||||||| ||||| | || Sbjct 2374371 CTCATTCTTGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 2374430 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| ||| ||| | || | ||| |||||||||| || ||| Sbjct 2374431 ACCCGCGCCTGCCGGTGTAGGGTAGGCACACACTGAGCCAGTCAGTGTAGCAAGCATGCA 2374490 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||| ||||||||| ||||| || ||||| Sbjct 2374491 GCCCTGGACATCTAAGGGCATCACAGATCTGTTATTG-CTCAATCTCGGGTGGC 2374543 >seq15971 Length=175860 Score = 120 bits (132), Expect = 5e-25 Identities = 163/222 (73%), Gaps = 18/222 (8%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||| ||||||| || ||||||| ||||| ||||||||| |||||| |||||| | Sbjct 17931 GTACAAAGGACAGGGACTTAATCAACGCAAGCTT-ATGACTCGCACTTACTGGGAATT-C 17874 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAAAG 116 |||||| | || ||||||||| ||||||||||| |||| ||||| | Sbjct 17873 CTCGTTCATATGGAATAATTGCAATCCCTGATCCCCATCAC----AAATGGGGTTCAATG 17818 Query 117 A-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGT--TGAATACATCAGTGTAGCGCG 173 |||| || ||||| | || ||||| | ||| ||| ||||||||| || Sbjct 17817 GGTTACTCGCACCTGCC-----AGTGGATAGGCACGTGCTGAGCCAGTCAGTGTAGGGCA 17763 Query 174 CGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATT 215 | | |||| | ||||||||||||||||||||||| ||||| Sbjct 17762 CATTTAGCCCTGGACATCTAAGGGCATCACAGACCTATTATT 17721 >seq15277 Length=881827 Score = 80.6 bits (88), Expect = 4e-13 Identities = 80/101 (79%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||| ||||||||||||| || ||||||| ||||| || | || |||||| |||| ||| Sbjct 92530 GTATAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATAATCTGCACTTACTGGGAA-TTC 92587 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCAC 101 |||||| | || || ||||||||| | ||||||||||| Sbjct 92588 CTCGTTCATGAGGAATAATTGCAATTTCCGATCCCCATCAC 92628 >seq6940 Length=186021 Score = 78.8 bits (86), Expect = 1e-12 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||| || ||||| ||||| ||| |||||| |||| ||| Sbjct 175894 GTACAAAGGGCAGGGACTTAATCAAGGCAAGCTT-ATGACCCGCACTTACTGGGAA-TTC 175951 Query 61 CTCGTTGAAGACCAACAATTGCAATGA 87 ||| || | | || ||||||||||| Sbjct 175952 CTCATTCATGGGGAATAATTGCAATGA 175978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751737929410