Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq27352 80.6 1e-13 seq33194 77.0 2e-12 >seq27352 Length=51001 Score = 80.6 bits (88), Expect = 1e-13 Identities = 88/117 (75%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| | ||| |||| | |||||| ||||| | | Sbjct 40066 GAACCCAAAGACTTTGGTTTCCCAGAAGCTGCCTGGTGAGTCATGGGAATAACTCCATCG 40125 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| |||||| |||| |||| ||| |||||||||||||||||||||||| || Sbjct 40126 GATTGCTAGTCAGCATCTTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTTGA 40182 >seq33194 Length=1326746 Score = 77.0 bits (84), Expect = 2e-12 Identities = 77/100 (77%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 18 TTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGTCGGCATA 77 |||| || ||| |||| ||| |||| ||||| |||| |||| ||||||||||| Sbjct 717783 TTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCCGGATCGCTAGTCGGCATC 717724 Query 78 GTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||| ||| | |||||||||||||||| |||||||| Sbjct 717723 GTTTATGGTCGGAAATACGACGGTATCTGATGGTCTTCGA 717684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278306107860