Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq27242 127 9e-27 seq15218 109 2e-21 seq8070 109 2e-21 seq741 102 3e-19 seq7707 100 1e-18 seq3560 98.7 4e-18 seq15470 95.1 5e-17 seq275 82.4 3e-13 >seq27242 Length=2599403 Score = 127 bits (140), Expect = 9e-27 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 1767043 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 1766984 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 1766983 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 1766924 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||||| ||| || || Sbjct 1766923 AGAGAGTTCAAGAGGGCGTGAAACCGTTGAGAGGTAAACG 1766884 >seq15218 Length=2171497 Score = 109 bits (120), Expect = 2e-21 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 47 GTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCC 106 |||| ||||||||||||| | || ||| |||||| | | ||||| |||||||| || Sbjct 595560 GTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAATACCAGCA 595619 Query 107 AGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGT 166 ||||||||||| ||||||| || | ||||| ||||||| |||||| | ||||||| Sbjct 595620 CGAGACCGATAGTCAACAAGTACTGTAAGGGAAAGTTGAAAAGAACTTTGAAGAGAGAGT 595679 Query 167 TAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 | || || | ||||| ||||| ||| || || Sbjct 595680 TCAAGAGAGCATGAAACCGTTGAGAGGTAAACG 595712 >seq8070 Length=66419 Score = 109 bits (120), Expect = 2e-21 Identities = 95/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||| ||||||||||||||||| ||| || ||||||||||||||||||||| Sbjct 47318 TGTTAGGACCCAAAAGATGGTGAACTATGTCTGGGCAGAGTGAAGCCAGAGGAAACTCTG 47377 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 ||| ||| || |||| | ||| || |||||| || || || ||||||||| ||| Sbjct 47378 GTGAAGGTTCATAGCGCTCCTGATGTTCAAATCAGTCATCCAACCTGGGTATAGAGGC 47435 >seq741 Length=56161 Score = 102 bits (112), Expect = 3e-19 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | |||| ||||||||||||| | || || | |||||| | ||||| ||||||| Sbjct 25449 GAGTTGGGTTGCTTGGGAATGCAGCCCAAAGTGCGTGGTAAACTCAATCTAAGGCTAAAT 25508 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 25509 ATCGGCAGGAGACCGATAGTCAACAAGTACCGTAACGGAAAGTTGAAAAGAACTTTGAAG 25568 Query 160 AGAGAGTTAAA 170 ||| |||| || Sbjct 25569 AGAAAGTTCAA 25579 >seq7707 Length=58772 Score = 100 bits (110), Expect = 1e-18 Identities = 117/157 (75%), Gaps = 1/157 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | |||| ||||||||||||| | | |||| |||||| | | |||| ||||||| Sbjct 1608 GAGTTGGGTTGCTTGGGAATGCAGCCCAGAGTGGGTGGTAAACTCCAACTAAGGCTAAAT 1667 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || ||||||||||| ||||||| | | | ||| ||||||| |||||| | Sbjct 1668 ACCTGCATGAGACCGATAGTCAACAAGTACCAT-AAGGGAAGTTGAAAAGAACTTTGAAG 1726 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 |||||||| || || |||||| |||||| ||| || Sbjct 1727 AGAGAGTTCAAGAGGGTGTGAAACTGTTGAGAGGTAA 1763 Score = 78.8 bits (86), Expect = 4e-12 Identities = 90/121 (74%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 79 AAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGA 138 ||| | | ||||| |||||||| | || ||||||||||| ||||||| | | || Sbjct 1500 AAACTCCATCTAAGGCTAAATACTTGCACGAGACCGATAGTCAACAAGTACCATAAGGGA 1441 Query 139 AAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGC 198 ||| ||||||| |||||| | |||||||| || || | ||||| ||||| ||| || | Sbjct 1440 AAGTTGAAAAGAACTTTGAAGAGAGAGTTCAAGAGGGCATGAAACCGTTGAGAGGTAAAC 1381 Query 199 G 199 | Sbjct 1380 G 1380 >seq3560 Length=1857 Score = 98.7 bits (108), Expect = 4e-18 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || |||| |||||| | ||||| ||||||| Sbjct 870 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGTGGGTGGTAAACCCCATCTAAGGCTAAAT 929 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || |||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 930 ACCTGCACAAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 989 Query 160 AGAGAGTTAAAAAG 173 |||| ||| || || Sbjct 990 AGAGTGTTCAAGAG 1003 >seq15470 Length=1063945 Score = 95.1 bits (104), Expect = 5e-17 Identities = 90/114 (79%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG- 629 ||| ||||||| ||||||||||||||| |||| ||| || ||||||||||||| ||| Sbjct 968670 ACCAGAAAGATAGTGAACTATGCCTGAGCAGGGCAAAGGCATAGGAAACTCTGGTAGAGA 968729 Query 630 GCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || ||| ||| | ||||||||| | ||| | ||||||||||||||| Sbjct 968730 TCTAATAGGGGTCCTGACATGCAAATCGGTGGTCCGACCTGGGTATAGGGGCGA 968783 >seq275 Length=1124622 Score = 82.4 bits (90), Expect = 3e-13 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 72 GGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAG 131 ||| |||||| | | ||||| |||||||| |||| ||||||||||| ||||||| Sbjct 107038 GGGTGGTAAACTCCATCTAAGGCTAAATACTGGCGCGAGACCGATAGTCAACAAGTACCA 107097 Query 132 TGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAA 191 | | ||||| ||||||| |||||| | |||| || || || | ||||| ||||| | Sbjct 107098 TAAGGGAAAGTTGAAAAGAACTTTGAAGAGAGCTTTCAAGAGGGCATGAAACCGTTGACA 107157 Query 192 GGGAAGCG 199 || || || Sbjct 107158 GGTAAACG 107165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079228357700