Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17]
35,974 sequences; 3,174,693,010 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq27242 127 9e-27
seq15218 109 2e-21
seq8070 109 2e-21
seq741 102 3e-19
seq7707 100 1e-18
seq3560 98.7 4e-18
seq15470 95.1 5e-17
seq275 82.4 3e-13
>seq27242
Length=2599403
Score = 127 bits (140), Expect = 9e-27
Identities = 124/160 (78%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||| ||||||||||||| | || ||| |||||| | | ||||| |||||||
Sbjct 1767043 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 1766984
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| |
Sbjct 1766983 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 1766924
Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|||||||| || || ||||||| ||||| ||| || ||
Sbjct 1766923 AGAGAGTTCAAGAGGGCGTGAAACCGTTGAGAGGTAAACG 1766884
>seq15218
Length=2171497
Score = 109 bits (120), Expect = 2e-21
Identities = 116/153 (76%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 47 GTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCC 106
|||| ||||||||||||| | || ||| |||||| | | ||||| |||||||| ||
Sbjct 595560 GTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAATACCAGCA 595619
Query 107 AGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGT 166
||||||||||| ||||||| || | ||||| ||||||| |||||| | |||||||
Sbjct 595620 CGAGACCGATAGTCAACAAGTACTGTAAGGGAAAGTTGAAAAGAACTTTGAAGAGAGAGT 595679
Query 167 TAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
| || || | ||||| ||||| ||| || ||
Sbjct 595680 TCAAGAGAGCATGAAACCGTTGAGAGGTAAACG 595712
>seq8070
Length=66419
Score = 109 bits (120), Expect = 2e-21
Identities = 95/118 (81%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623
|||| |||||| ||||||||||||||||| ||| || |||||||||||||||||||||
Sbjct 47318 TGTTAGGACCCAAAAGATGGTGAACTATGTCTGGGCAGAGTGAAGCCAGAGGAAACTCTG 47377
Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681
||| ||| || |||| | ||| || |||||| || || || ||||||||| |||
Sbjct 47378 GTGAAGGTTCATAGCGCTCCTGATGTTCAAATCAGTCATCCAACCTGGGTATAGAGGC 47435
>seq741
Length=56161
Score = 102 bits (112), Expect = 3e-19
Identities = 101/131 (77%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||| | |||| ||||||||||||| | || || | |||||| | ||||| |||||||
Sbjct 25449 GAGTTGGGTTGCTTGGGAATGCAGCCCAAAGTGCGTGGTAAACTCAATCTAAGGCTAAAT 25508
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
|| ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| |
Sbjct 25509 ATCGGCAGGAGACCGATAGTCAACAAGTACCGTAACGGAAAGTTGAAAAGAACTTTGAAG 25568
Query 160 AGAGAGTTAAA 170
||| |||| ||
Sbjct 25569 AGAAAGTTCAA 25579
>seq7707
Length=58772
Score = 100 bits (110), Expect = 1e-18
Identities = 117/157 (75%), Gaps = 1/157 (1%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||| | |||| ||||||||||||| | | |||| |||||| | | |||| |||||||
Sbjct 1608 GAGTTGGGTTGCTTGGGAATGCAGCCCAGAGTGGGTGGTAAACTCCAACTAAGGCTAAAT 1667
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| || ||||||||||| ||||||| | | | ||| ||||||| |||||| |
Sbjct 1668 ACCTGCATGAGACCGATAGTCAACAAGTACCAT-AAGGGAAGTTGAAAAGAACTTTGAAG 1726
Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196
|||||||| || || |||||| |||||| ||| ||
Sbjct 1727 AGAGAGTTCAAGAGGGTGTGAAACTGTTGAGAGGTAA 1763
Score = 78.8 bits (86), Expect = 4e-12
Identities = 90/121 (74%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 79 AAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGA 138
||| | | ||||| |||||||| | || ||||||||||| ||||||| | | ||
Sbjct 1500 AAACTCCATCTAAGGCTAAATACTTGCACGAGACCGATAGTCAACAAGTACCATAAGGGA 1441
Query 139 AAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGC 198
||| ||||||| |||||| | |||||||| || || | ||||| ||||| ||| || |
Sbjct 1440 AAGTTGAAAAGAACTTTGAAGAGAGAGTTCAAGAGGGCATGAAACCGTTGAGAGGTAAAC 1381
Query 199 G 199
|
Sbjct 1380 G 1380
>seq3560
Length=1857
Score = 98.7 bits (108), Expect = 4e-18
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||| ||||||||||||| | || |||| |||||| | ||||| |||||||
Sbjct 870 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGTGGGTGGTAAACCCCATCTAAGGCTAAAT 929
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| || |||||||||| ||||||| || | ||||| ||||||| |||||| |
Sbjct 930 ACCTGCACAAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 989
Query 160 AGAGAGTTAAAAAG 173
|||| ||| || ||
Sbjct 990 AGAGTGTTCAAGAG 1003
>seq15470
Length=1063945
Score = 95.1 bits (104), Expect = 5e-17
Identities = 90/114 (79%), Gaps = 1/114 (1%)
Strand=Plus/Plus
Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG- 629
||| ||||||| ||||||||||||||| |||| ||| || ||||||||||||| |||
Sbjct 968670 ACCAGAAAGATAGTGAACTATGCCTGAGCAGGGCAAAGGCATAGGAAACTCTGGTAGAGA 968729
Query 630 GCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|| || ||| ||| | ||||||||| | ||| | |||||||||||||||
Sbjct 968730 TCTAATAGGGGTCCTGACATGCAAATCGGTGGTCCGACCTGGGTATAGGGGCGA 968783
>seq275
Length=1124622
Score = 82.4 bits (90), Expect = 3e-13
Identities = 95/128 (74%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 72 GGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAG 131
||| |||||| | | ||||| |||||||| |||| ||||||||||| |||||||
Sbjct 107038 GGGTGGTAAACTCCATCTAAGGCTAAATACTGGCGCGAGACCGATAGTCAACAAGTACCA 107097
Query 132 TGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAA 191
| | ||||| ||||||| |||||| | |||| || || || | ||||| ||||| |
Sbjct 107098 TAAGGGAAAGTTGAAAAGAACTTTGAAGAGAGCTTTCAAGAGGGCATGAAACCGTTGACA 107157
Query 192 GGGAAGCG 199
|| || ||
Sbjct 107158 GGTAAACG 107165
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079228357700
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |