Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17]
35,974 sequences; 3,174,693,010 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq6837 131 3e-28
seq6755 131 3e-28
seq6769 114 2e-23
seq6793 105 1e-20
seq53 102 1e-19
seq6823 98.7 2e-18
seq15434 91.5 2e-16
seq15330 89.7 8e-16
seq42 87.8 3e-15
seq9594 82.4 1e-13
seq22339 78.8 1e-12
seq15485 75.2 2e-11
seq6963 73.4 6e-11
>seq6837
Length=3619487
Score = 131 bits (144), Expect = 3e-28
Identities = 81/86 (94%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 173 CGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAG 232
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||
Sbjct 795928 CGGAATTAACCAGACAAATC--TCCACCAACTAAGAATGGCCATGCACCACCACCCACAG 795985
Query 233 AATCAAGAAAGAGCTATCAATCTGTC 258
|||| |||||||||||||||||||||
Sbjct 795986 AATCGAGAAAGAGCTATCAATCTGTC 796011
>seq6755
Length=1376598
Score = 131 bits (144), Expect = 3e-28
Identities = 94/108 (87%), Gaps = 3/108 (3%)
Strand=Plus/Minus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| | | |||| |||||||||||||||||||||||||||||||||||
Sbjct 334023 CTAGTTAGCATGCCAGAGTCTTGTTCGTTATCGGAATTAACCAGACAAATCACTCCA--- 333967
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249
||||||||||||||||||||||| || | |||||| ||||||||||||
Sbjct 333966 ACTAAGAACGGCCATGCACCACCCCCAACAGAATCGAGAAAGAGCTAT 333919
>seq6769
Length=300271
Score = 114 bits (126), Expect = 2e-23
Identities = 75/83 (90%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 166 TCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCA 225
|||||||||||||| || |||||||||||||||||| |||||| |||||||||||| |
Sbjct 294268 TCGTTATCGGAATTTACTGGACAAATCACTCCACCAAGTAAGAAGGGCCATGCACCATCC 294327
Query 226 CCCATAGAATCAAGAAAGAGCTA 248
|||| ||||||||||||||||||
Sbjct 294328 CCCACAGAATCAAGAAAGAGCTA 294350
>seq6793
Length=4943988
Score = 105 bits (116), Expect = 1e-20
Identities = 85/102 (83%), Gaps = 2/102 (2%)
Strand=Plus/Plus
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218
||||| || ||||| ||||||||||||||||||||||||| || || |||| | ||||||
Sbjct 606934 GTCTCATTTGTTATTGGAATTAACCAGACAAATCACTCCATCAGCTTAGAATGTCCATGC 606993
Query 219 ACCACCACCCATAGAAT--CAAGAAAGAGCTATCAATCTGTC 258
|| |||||||| ||||| ||| |||| |||||||||||
Sbjct 606994 ACAACCACCCACAGAATAGAGAGAGAGAGTCATCAATCTGTC 607035
>seq53
Length=4446849
Score = 102 bits (112), Expect = 1e-19
Identities = 84/100 (84%), Gaps = 2/100 (2%)
Strand=Plus/Minus
Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75
||||||||||||| |||| |||| | |||||||||| ||||||||||||||||||| |||
Sbjct 3746123 TCAGTGTAGCGCGGGTGCAGCCCTGGACATCTAAGGACATCACAGACCTGTTATTG-CTC 3746065
Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115
|| | || |||||| | |||| | |||||||| |||||
Sbjct 3746064 AATC-TCGGGTGGCTGAACGCCACTTGTCCCTCTTAGAAG 3746026
>seq6823
Length=3687145
Score = 98.7 bits (108), Expect = 2e-18
Identities = 84/101 (83%), Gaps = 2/101 (2%)
Strand=Plus/Plus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
||||||||||| || ||| |||| | |||||||||||||||||||| ||||||||| ||
Sbjct 2374471 GTCAGTGTAGCAAGCATGCAGCCCTGGACATCTAAGGGCATCACAGATCTGTTATTG-CT 2374529
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115
||| | || |||||| | |||| | ||||||||||||||
Sbjct 2374530 CAATC-TCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAG 2374569
>seq15434
Length=459246
Score = 91.5 bits (100), Expect = 2e-16
Identities = 88/113 (78%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205
|||||| || | || | ||| ||| |||||||||||||||||||| || ||| ||
Sbjct 442378 TTAGCATGTCAGTGTTTTATTCAGTATTGGAATTAACCAGACAAATCATTCTTCCACATA 442319
Query 206 AGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||| |||||||||| | |||||| ||||| | || |||||||||| ||||
Sbjct 442318 AGAATGGCCATGCACAAACACCCACAGAATTGACAACTAGCTATCAATTTGTC 442266
>seq15330
Length=2990266
Score = 89.7 bits (98), Expect = 8e-16
Identities = 75/92 (82%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 158 GGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATG 217
|| ||| ||| ||| | |||| | || | |||||||||||||||||||||| |||||||
Sbjct 1419085 GGACTCTTTCATTACCAGAATCAGTCAAAGAAATCACTCCACCAACTAAGAATGGCCATG 1419144
Query 218 CACCACCACCCATAGAATCAAGAAAGAGCTAT 249
| ||| |||| ||||||||||| |||||||
Sbjct 1419145 CTCCATGGCCCACAGAATCAAGAAGGAGCTAT 1419176
>seq42
Length=4688437
Score = 87.8 bits (96), Expect = 3e-15
Identities = 91/117 (78%), Gaps = 3/117 (3%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||| ||| | |||| || ||||| ||||||||| ||| |||||||||||| |
Sbjct 239273 CTAATTAGTAGGCAA--GTCTTATTTGTTATTGGAATTAACTAGATAAATCACTCCACTA 239330
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
| |||||| | | |||||| |||| || |||| ||||||| ||||| |||||||
Sbjct 239331 ATTAAGAATGCCTATGCACTACCATGCACAGAACTGAGAAAGAACTATC-ATCTGTC 239386
Score = 75.2 bits (82), Expect = 2e-11
Identities = 62/76 (82%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218
||||| ||| |||| ||||||||||||| |||| ||||| | || |||||| ||| ||
Sbjct 240422 GTCTCATTCATTATTGGAATTAACCAGATAAATGACTCCTCTAATTAAGAATGGCTGTGT 240481
Query 219 ACCACCACCCATAGAA 234
|| |||||||||| ||
Sbjct 240482 ACTACCACCCATATAA 240497
>seq9594
Length=2110
Score = 82.4 bits (90), Expect = 1e-13
Identities = 57/65 (88%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| | | |||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1375 CTAGTTAGCATGCCAGCGTCTCGTTCGTTATTGGAATTAACCAGACAAATCACTCCGCCA 1434
Query 202 ACTAA 206
|||||
Sbjct 1435 ACTAA 1439
>seq22339
Length=228127
Score = 78.8 bits (86), Expect = 1e-12
Identities = 80/100 (80%), Gaps = 6/100 (6%)
Strand=Plus/Plus
Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCC-ACCAACTAAGAACGGCCATGC 218
|||| ||| || ||||||||||| ||||||| |||| |||| |||| | ||| ||
Sbjct 147435 TCTCATTCCTTCATGGAATTAACCATACAAATC-CTCCTTCCAAATAAGGATGGC--TGT 147491
Query 219 ACC--ACCACCCATAGAATCAAGAAAGAGCTATCAATCTG 256
| | |||||||| ||||||||||||||||| ||||||||
Sbjct 147492 ATCATACCACCCACAGAATCAAGAAAGAGCTGTCAATCTG 147531
>seq15485
Length=3197822
Score = 75.2 bits (82), Expect = 2e-11
Identities = 58/67 (87%), Gaps = 3/67 (4%)
Strand=Plus/Minus
Query 151 AGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAAC 210
|||| | ||||| ||||||||| |||| ||||||||||||| |||||||||||||||
Sbjct 1228764 AGGTCAGAGTCTCATTCGTTATCAGAAT-AACCAGACAAATCGCTCCACCAACTAAGA-- 1228708
Query 211 GGCCATG 217
|||||||
Sbjct 1228707 GGCCATG 1228701
>seq6963
Length=4024090
Score = 73.4 bits (80), Expect = 6e-11
Identities = 74/94 (79%), Gaps = 2/94 (2%)
Strand=Plus/Plus
Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205
|||||| | | |||| | || ||||| ||||||||||||||| | |||||| | ||
Sbjct 3376157 TTAGCATGGCAGAGTCT-GCTCCTTATCAGAATTAACCAGACAATTG-CTCCACTAGTTA 3376214
Query 206 AGAACGGCCATGCACCACCACCCATAGAATCAAG 239
||||| |||||| ||||||||||| |||| |||
Sbjct 3376215 AGAACAGCCATGACCCACCACCCATGGAATAAAG 3376248
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796522316694
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |