Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq6837 131 3e-28 seq6755 131 3e-28 seq6769 114 2e-23 seq6793 105 1e-20 seq53 102 1e-19 seq6823 98.7 2e-18 seq15434 91.5 2e-16 seq15330 89.7 8e-16 seq42 87.8 3e-15 seq9594 82.4 1e-13 seq22339 78.8 1e-12 seq15485 75.2 2e-11 seq6963 73.4 6e-11 >seq6837 Length=3619487 Score = 131 bits (144), Expect = 3e-28 Identities = 81/86 (94%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 173 CGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAG 232 |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| || Sbjct 795928 CGGAATTAACCAGACAAATC--TCCACCAACTAAGAATGGCCATGCACCACCACCCACAG 795985 Query 233 AATCAAGAAAGAGCTATCAATCTGTC 258 |||| ||||||||||||||||||||| Sbjct 795986 AATCGAGAAAGAGCTATCAATCTGTC 796011 >seq6755 Length=1376598 Score = 131 bits (144), Expect = 3e-28 Identities = 94/108 (87%), Gaps = 3/108 (3%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||| ||||||||||||||||||||||||||||||||||| Sbjct 334023 CTAGTTAGCATGCCAGAGTCTTGTTCGTTATCGGAATTAACCAGACAAATCACTCCA--- 333967 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 ||||||||||||||||||||||| || | |||||| |||||||||||| Sbjct 333966 ACTAAGAACGGCCATGCACCACCCCCAACAGAATCGAGAAAGAGCTAT 333919 >seq6769 Length=300271 Score = 114 bits (126), Expect = 2e-23 Identities = 75/83 (90%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 166 TCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCA 225 |||||||||||||| || |||||||||||||||||| |||||| |||||||||||| | Sbjct 294268 TCGTTATCGGAATTTACTGGACAAATCACTCCACCAAGTAAGAAGGGCCATGCACCATCC 294327 Query 226 CCCATAGAATCAAGAAAGAGCTA 248 |||| |||||||||||||||||| Sbjct 294328 CCCACAGAATCAAGAAAGAGCTA 294350 >seq6793 Length=4943988 Score = 105 bits (116), Expect = 1e-20 Identities = 85/102 (83%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||| || ||||| ||||||||||||||||||||||||| || || |||| | |||||| Sbjct 606934 GTCTCATTTGTTATTGGAATTAACCAGACAAATCACTCCATCAGCTTAGAATGTCCATGC 606993 Query 219 ACCACCACCCATAGAAT--CAAGAAAGAGCTATCAATCTGTC 258 || |||||||| ||||| ||| |||| ||||||||||| Sbjct 606994 ACAACCACCCACAGAATAGAGAGAGAGAGTCATCAATCTGTC 607035 >seq53 Length=4446849 Score = 102 bits (112), Expect = 1e-19 Identities = 84/100 (84%), Gaps = 2/100 (2%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||| |||| |||| | |||||||||| ||||||||||||||||||| ||| Sbjct 3746123 TCAGTGTAGCGCGGGTGCAGCCCTGGACATCTAAGGACATCACAGACCTGTTATTG-CTC 3746065 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 || | || |||||| | |||| | |||||||| ||||| Sbjct 3746064 AATC-TCGGGTGGCTGAACGCCACTTGTCCCTCTTAGAAG 3746026 >seq6823 Length=3687145 Score = 98.7 bits (108), Expect = 2e-18 Identities = 84/101 (83%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||| || ||| |||| | |||||||||||||||||||| ||||||||| || Sbjct 2374471 GTCAGTGTAGCAAGCATGCAGCCCTGGACATCTAAGGGCATCACAGATCTGTTATTG-CT 2374529 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||| | || |||||| | |||| | |||||||||||||| Sbjct 2374530 CAATC-TCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAG 2374569 >seq15434 Length=459246 Score = 91.5 bits (100), Expect = 2e-16 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205 |||||| || | || | ||| ||| |||||||||||||||||||| || ||| || Sbjct 442378 TTAGCATGTCAGTGTTTTATTCAGTATTGGAATTAACCAGACAAATCATTCTTCCACATA 442319 Query 206 AGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||| |||||||||| | |||||| ||||| | || |||||||||| |||| Sbjct 442318 AGAATGGCCATGCACAAACACCCACAGAATTGACAACTAGCTATCAATTTGTC 442266 >seq15330 Length=2990266 Score = 89.7 bits (98), Expect = 8e-16 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 158 GGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATG 217 || ||| ||| ||| | |||| | || | |||||||||||||||||||||| ||||||| Sbjct 1419085 GGACTCTTTCATTACCAGAATCAGTCAAAGAAATCACTCCACCAACTAAGAATGGCCATG 1419144 Query 218 CACCACCACCCATAGAATCAAGAAAGAGCTAT 249 | ||| |||| ||||||||||| ||||||| Sbjct 1419145 CTCCATGGCCCACAGAATCAAGAAGGAGCTAT 1419176 >seq42 Length=4688437 Score = 87.8 bits (96), Expect = 3e-15 Identities = 91/117 (78%), Gaps = 3/117 (3%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||| ||| | |||| || ||||| ||||||||| ||| |||||||||||| | Sbjct 239273 CTAATTAGTAGGCAA--GTCTTATTTGTTATTGGAATTAACTAGATAAATCACTCCACTA 239330 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | |||||| | | |||||| |||| || |||| ||||||| ||||| ||||||| Sbjct 239331 ATTAAGAATGCCTATGCACTACCATGCACAGAACTGAGAAAGAACTATC-ATCTGTC 239386 Score = 75.2 bits (82), Expect = 2e-11 Identities = 62/76 (82%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||| ||| |||| ||||||||||||| |||| ||||| | || |||||| ||| || Sbjct 240422 GTCTCATTCATTATTGGAATTAACCAGATAAATGACTCCTCTAATTAAGAATGGCTGTGT 240481 Query 219 ACCACCACCCATAGAA 234 || |||||||||| || Sbjct 240482 ACTACCACCCATATAA 240497 >seq9594 Length=2110 Score = 82.4 bits (90), Expect = 1e-13 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||||||||||||| |||||||||||||||||||||||| ||| Sbjct 1375 CTAGTTAGCATGCCAGCGTCTCGTTCGTTATTGGAATTAACCAGACAAATCACTCCGCCA 1434 Query 202 ACTAA 206 ||||| Sbjct 1435 ACTAA 1439 >seq22339 Length=228127 Score = 78.8 bits (86), Expect = 1e-12 Identities = 80/100 (80%), Gaps = 6/100 (6%) Strand=Plus/Plus Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCC-ACCAACTAAGAACGGCCATGC 218 |||| ||| || ||||||||||| ||||||| |||| |||| |||| | ||| || Sbjct 147435 TCTCATTCCTTCATGGAATTAACCATACAAATC-CTCCTTCCAAATAAGGATGGC--TGT 147491 Query 219 ACC--ACCACCCATAGAATCAAGAAAGAGCTATCAATCTG 256 | | |||||||| ||||||||||||||||| |||||||| Sbjct 147492 ATCATACCACCCACAGAATCAAGAAAGAGCTGTCAATCTG 147531 >seq15485 Length=3197822 Score = 75.2 bits (82), Expect = 2e-11 Identities = 58/67 (87%), Gaps = 3/67 (4%) Strand=Plus/Minus Query 151 AGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAAC 210 |||| | ||||| ||||||||| |||| ||||||||||||| ||||||||||||||| Sbjct 1228764 AGGTCAGAGTCTCATTCGTTATCAGAAT-AACCAGACAAATCGCTCCACCAACTAAGA-- 1228708 Query 211 GGCCATG 217 ||||||| Sbjct 1228707 GGCCATG 1228701 >seq6963 Length=4024090 Score = 73.4 bits (80), Expect = 6e-11 Identities = 74/94 (79%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205 |||||| | | |||| | || ||||| ||||||||||||||| | |||||| | || Sbjct 3376157 TTAGCATGGCAGAGTCT-GCTCCTTATCAGAATTAACCAGACAATTG-CTCCACTAGTTA 3376214 Query 206 AGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||| |||||| ||||||||||| |||| ||| Sbjct 3376215 AGAACAGCCATGACCCACCACCCATGGAATAAAG 3376248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796522316694