Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq15618 271 1e-70 seq897 262 7e-68 seq6889 192 1e-46 seq6876 141 2e-31 seq7479 136 7e-30 seq6755 131 3e-28 seq9817 127 3e-27 seq22921 123 4e-26 seq15247 105 1e-20 seq15384 102 1e-19 seq30454 86.0 1e-14 seq7089 82.4 1e-13 >seq15618 Length=120643 Score = 271 bits (300), Expect = 1e-70 Identities = 245/306 (80%), Gaps = 19/306 (6%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | | | || |||||||||||||||||||||| |||||| Sbjct 75760 TACTGAGCAGGATTACTATGGCGACAACCCATCATCAGTAGGGTAAAACTAACTTGTCTC 75819 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||| | ||||||| || ||| ||||||||||||||||||||||||| || | Sbjct 75820 AAGAC------ATCCCAGCTTACATTCACTATTAGTGGGTGAACAATCCAACGTTTGGTG 75873 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGAC------ATCGAAGGATCAAAAAGCAACG 173 ||||||||||| |||||||||||||||||| |||||||||||||||||| ||| Sbjct 75874 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGACATCGAAGGATCAAAAAGCGACG 75933 Query 174 TCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCT 233 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 75934 TCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACA-CT 75992 Query 234 CTAGCCTCAAATTTCGAGGGACTAAAGGATC-----GATAGGCCACACTTTCATGGTTTG 288 | || | ||| | | || | ||||||| | ||||| |||||||| ||| || Sbjct 75993 CCTGCTTAAAACCCCAAAGGTCAGAAGGATCCTCATGTGAGGCCCCACTTTCACGGTCTG 76052 Query 289 TATTCA 294 |||||| Sbjct 76053 TATTCA 76058 >seq897 Length=60952 Score = 262 bits (290), Expect = 7e-68 Identities = 216/262 (82%), Gaps = 1/262 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||| |||||| |||||||||||| || || |||| ||||||||| |||||||| Sbjct 17265 TCATCAGTCCAGTAAAATTAACCTGTCTCACGATGGCCTAATCCCAGCTCATGTTCCCTA 17324 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||||||||| |||||| || |||||||||||| ||||||||||||||| | Sbjct 17325 TTAGTGGGTGAACACTCCAACATTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCAA 17384 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||| ||||||||||||||||||| |||||||| |||||||||||||||||| |||||| Sbjct 17385 CATCAAAGGATCAAAAAGCAACGTTTCTATGAACACTTGGCTGCCACAAGCCA-TTATCC 17443 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||| ||||||||||||| || ||| || | ||| | | || | |||||| | ||| Sbjct 17444 CTGGGGTAACTTTTCTGACATCTCCTGCTTAAAACCCCAAAGGTCAGAAGGATTGTGAGG 17503 Query 271 CCACACTTTCATGGTTTGTATT 292 || | |||||| ||| |||||| Sbjct 17504 CCCCGCTTTCACGGTCTGTATT 17525 >seq6889 Length=2922735 Score = 192 bits (212), Expect = 1e-46 Identities = 165/204 (81%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 || |||||||||||||||||||||| |||| || || ||| ||||||||| ||| |||| Sbjct 125986 TCCTCAGTAGGGTAAAACTAACCTGCCTCACAACTGTGTAATCCCAGCTCATGTTTCCTA 125927 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||| | || |||||||||||| ||||||| |||| | || Sbjct 125926 TTAGTGGGTGAACAATCCAGTGATTGGTGAATTCTGCTTCACAATGATAGTAAGAACAGA 125867 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 || ||||||| |||||| ||| || |||||||| ||| || ||||||| |||||| Sbjct 125866 TATTGAAGGATTAAAAAGAAACATCACTATGAACACTTAGCCATTTCAAGCCAATTATCC 125807 Query 211 CTGTGGTAACTTTTCTGGCACCTC 234 ||||| |||||||| || | |||| Sbjct 125806 CTGTGCTAACTTTTTTGACTCCTC 125783 >seq6876 Length=1543992 Score = 141 bits (156), Expect = 2e-31 Identities = 102/118 (86%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 ||||||||||||||||||||| |||| |||||||||||| |||||||||| ||| Sbjct 510386 ATTAGTGGGTGAACAATCCAATGCTTGGTGAATTCTGCTTCACAATGATAGGAAATGCCA 510327 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTA 207 ||| |||||||||||||| |||| |||||||||||||||||||||||| ||||||| Sbjct 510326 GCATTGAAGGATCAAAAAGTGACGTAGCTATGAACGCTTGGCTGCCACAATCCAGTTA 510269 >seq7479 Length=215354 Score = 136 bits (150), Expect = 7e-30 Identities = 124/154 (81%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | | | || |||||||||||||| ||||||||| |||| Sbjct 589 TACTTAGCAGGATTACTATGGTGACAACCCATCATCAGTAGGGTATAACTAACCTATCTC 530 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | | ||||||||||||||||| |||||||||| | ||||||||||| ||| ||| | Sbjct 529 ACAATGGTCTAAACCCAGCTCAAGTTCCCTATTGGCGGGTGAACAATGCAATACTT-GTG 471 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACAT 153 ||||||||||| ||||||| ||||||| |||| Sbjct 470 AATTCTGCTTCACAATGATAGAAAGAGCCAACAT 437 >seq6755 Length=1376598 Score = 131 bits (144), Expect = 3e-28 Identities = 148/197 (75%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||| || ||||| ||| | || | || | |||||||| | | ||| |||| || Sbjct 1226647 TCATCACTAAGGTAAGACTCATCTTTTCCACAATGGTCTAAATCAATTTCATATTCCTTA 1226588 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 | ||||||||||||||||||| | |||||||| ||| || ||||||||| || | Sbjct 1226587 TCAGTGGGTGAACAATCCAACTCAAGGTGAATTCTGTTTCACAATAATAGGAAGAACCAA 1226528 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||| |||||| |||||| | | || |||||||| ||||| ||||||| || || | | Sbjct 1226527 CATTGAAGGAACAAAAAACCATGT-GCTATGAATGCTTGTTCTCCACAAGTCAATTGTTC 1226469 Query 211 CTGTGGTAACTTTTCTG 227 |||| ||||||||||| Sbjct 1226468 TTGTGTTAACTTTTCTG 1226452 >seq9817 Length=7715 Score = 127 bits (140), Expect = 3e-27 Identities = 131/170 (77%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 66 GTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCT 125 ||||||| | |||||| | ||| |||||||| ||||||||| ||| |||| |||||| Sbjct 3779 GTCTAAATCTAGCTCATGATCCTTATTAGTGAGTGAACAATTCAATGCTTTTAAAATTCT 3838 Query 126 GCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACG 185 ||||| | || ||||| | | ||| ||||||||||||||| || ||||||| | Sbjct 3839 GCTTCATAAAGAGTGGAAGTGGCAACACTGAAGGATCAAAAAGCTGAGTTCCTATGAATG 3898 Query 186 CTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCT 235 |||| ||||| |||||||||||||||||| ||||||| ||| ||| Sbjct 3899 GTTGGACATGACAAGTCAGTTATCCCTGTGGTAA-TTTTCTGACACTTCT 3947 >seq22921 Length=120394 Score = 123 bits (136), Expect = 4e-26 Identities = 153/209 (73%), Gaps = 13/209 (6%) Strand=Plus/Plus Query 42 GTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGA 101 |||||| | | |||||||||| | |||||||||||||| ||| || || || || || Sbjct 105181 GTAAAAGCAGCTTGTCTCATGATAATTTAAACCCAGCTCACATTCTCTCTTGGTAGGGGA 105240 Query 102 ACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAG------AGCCGACATCG 155 |||||||| ||| || |||||| || || ||| | | || | || | Sbjct 105241 ACAATCCAGTTCTT---GA----TGCTTCATAATAATGGGAGGGAGGGGAACCAATATTG 105293 Query 156 AAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTG 215 ||| |||| ||||||| ||| ||||||| ||||||||||| ||||||| ||||| || || Sbjct 105294 AAGAATCAGAAAGCAATGTCTCTATGAATGCTTGGCTGCCTCAAGCCATTTATCTCTATG 105353 Query 216 GTAACTTTTCTGGCACCTCTAGCCTCAAA 244 |||||| |||| || |||| || | ||| Sbjct 105354 TTAACTTCTCTGACAGCTCTTGCTTAAAA 105382 >seq15247 Length=1353484 Score = 105 bits (116), Expect = 1e-20 Identities = 64/68 (94%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||| Sbjct 104934 TCATCAGTAGGGTAAAACTAACCTGTCTCACAATGGTCTAATCCCAGCTCACGTTCCCTA 104875 Query 91 TTAGTGGG 98 |||||||| Sbjct 104874 TTAGTGGG 104867 >seq15384 Length=2181830 Score = 102 bits (112), Expect = 1e-19 Identities = 120/160 (75%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| || ||| ||||||||| |||||| | | ||| ||| ||||| | | ||||| | Sbjct 1533315 TCATTAGCAGGTTAAAACTAATCTGTCTTACAATGGTTTAAGCCCAGTTTATGTTCCTTG 1533256 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||| ||||| ||||||||||| |||| ||| ||| |||| |||| ||| |||| | Sbjct 1533255 TTAATGGGTAAACAATCCAACTCTTAGTGAACTCTACTTCATAGTGATGGGA--AGCCAA 1533198 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGG 190 | ||||||||||||| | || ||||||| |||||| Sbjct 1533197 TACTGAAGGATCAAAAA-TTATATCACTATGAATGCTTGG 1533159 >seq30454 Length=3642745 Score = 86.0 bits (94), Expect = 1e-14 Identities = 80/102 (78%), Gaps = 11/102 (11%) Strand=Plus/Plus Query 134 ATGATAGGAAGAGCCGACATCGAAGGAT--CAAAAAGCAACGTCGCTATGAACGCTTGGC 191 ||||||||||||||| |||||||||||| ||||| || || |||||||| ||| Sbjct 1872590 ATGATAGGAAGAGCCAACATCGAAGGATAAAAAAAACAAATGTGGCTATGAATGCT---- 1872645 Query 192 TGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCT 233 |||| ||||||||| | |||||||||||||| ||||| Sbjct 1872646 -----CAAGTCAGTTATCCTTATGGTAACTTTTCTGACACCT 1872682 >seq7089 Length=3951797 Score = 82.4 bits (90), Expect = 1e-13 Identities = 79/101 (78%), Gaps = 3/101 (3%) Strand=Plus/Plus Query 122 TTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATG 181 ||||||||| | | ||| | ||||| ||| |||||||||||||||| ||| ||||| Sbjct 1635066 TTCTGCTTCTG---GGTAGCAGGAGCCAACAATGAAGGATCAAAAAGCACAGTCACTATG 1635122 Query 182 AACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTT 222 | |||||||| || ||||||||||| ||||| ||||| Sbjct 1635123 GAAACTTGGCTGTTACTTGCCAGTTATCCTTGTGGCAACTT 1635163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854092638144