Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17]
35,974 sequences; 3,174,693,010 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq15618 271 1e-70
seq897 262 7e-68
seq6889 192 1e-46
seq6876 141 2e-31
seq7479 136 7e-30
seq6755 131 3e-28
seq9817 127 3e-27
seq22921 123 4e-26
seq15247 105 1e-20
seq15384 102 1e-19
seq30454 86.0 1e-14
seq7089 82.4 1e-13
>seq15618
Length=120643
Score = 271 bits (300), Expect = 1e-70
Identities = 245/306 (80%), Gaps = 19/306 (6%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | ||||| || | | | || |||||||||||||||||||||| ||||||
Sbjct 75760 TACTGAGCAGGATTACTATGGCGACAACCCATCATCAGTAGGGTAAAACTAACTTGTCTC 75819
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| ||| | ||||||| || ||| ||||||||||||||||||||||||| || |
Sbjct 75820 AAGAC------ATCCCAGCTTACATTCACTATTAGTGGGTGAACAATCCAACGTTTGGTG 75873
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGAC------ATCGAAGGATCAAAAAGCAACG 173
||||||||||| |||||||||||||||||| |||||||||||||||||| |||
Sbjct 75874 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGACATCGAAGGATCAAAAAGCGACG 75933
Query 174 TCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCT 233
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 75934 TCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACA-CT 75992
Query 234 CTAGCCTCAAATTTCGAGGGACTAAAGGATC-----GATAGGCCACACTTTCATGGTTTG 288
| || | ||| | | || | ||||||| | ||||| |||||||| ||| ||
Sbjct 75993 CCTGCTTAAAACCCCAAAGGTCAGAAGGATCCTCATGTGAGGCCCCACTTTCACGGTCTG 76052
Query 289 TATTCA 294
||||||
Sbjct 76053 TATTCA 76058
>seq897
Length=60952
Score = 262 bits (290), Expect = 7e-68
Identities = 216/262 (82%), Gaps = 1/262 (0%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||||||| |||||| |||||||||||| || || |||| ||||||||| ||||||||
Sbjct 17265 TCATCAGTCCAGTAAAATTAACCTGTCTCACGATGGCCTAATCCCAGCTCATGTTCCCTA 17324
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
|||||||||||||| |||||| || |||||||||||| ||||||||||||||| |
Sbjct 17325 TTAGTGGGTGAACACTCCAACATTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCAA 17384
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
|||| ||||||||||||||||||| |||||||| |||||||||||||||||| ||||||
Sbjct 17385 CATCAAAGGATCAAAAAGCAACGTTTCTATGAACACTTGGCTGCCACAAGCCA-TTATCC 17443
Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270
||| ||||||||||||| || ||| || | ||| | | || | |||||| | |||
Sbjct 17444 CTGGGGTAACTTTTCTGACATCTCCTGCTTAAAACCCCAAAGGTCAGAAGGATTGTGAGG 17503
Query 271 CCACACTTTCATGGTTTGTATT 292
|| | |||||| ||| ||||||
Sbjct 17504 CCCCGCTTTCACGGTCTGTATT 17525
>seq6889
Length=2922735
Score = 192 bits (212), Expect = 1e-46
Identities = 165/204 (81%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|| |||||||||||||||||||||| |||| || || ||| ||||||||| ||| ||||
Sbjct 125986 TCCTCAGTAGGGTAAAACTAACCTGCCTCACAACTGTGTAATCCCAGCTCATGTTTCCTA 125927
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
||||||||||||||||||| | || |||||||||||| ||||||| |||| | ||
Sbjct 125926 TTAGTGGGTGAACAATCCAGTGATTGGTGAATTCTGCTTCACAATGATAGTAAGAACAGA 125867
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
|| ||||||| |||||| ||| || |||||||| ||| || ||||||| ||||||
Sbjct 125866 TATTGAAGGATTAAAAAGAAACATCACTATGAACACTTAGCCATTTCAAGCCAATTATCC 125807
Query 211 CTGTGGTAACTTTTCTGGCACCTC 234
||||| |||||||| || | ||||
Sbjct 125806 CTGTGCTAACTTTTTTGACTCCTC 125783
>seq6876
Length=1543992
Score = 141 bits (156), Expect = 2e-31
Identities = 102/118 (86%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149
||||||||||||||||||||| |||| |||||||||||| |||||||||| |||
Sbjct 510386 ATTAGTGGGTGAACAATCCAATGCTTGGTGAATTCTGCTTCACAATGATAGGAAATGCCA 510327
Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTA 207
||| |||||||||||||| |||| |||||||||||||||||||||||| |||||||
Sbjct 510326 GCATTGAAGGATCAAAAAGTGACGTAGCTATGAACGCTTGGCTGCCACAATCCAGTTA 510269
>seq7479
Length=215354
Score = 136 bits (150), Expect = 7e-30
Identities = 124/154 (81%), Gaps = 2/154 (1%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | ||||| || | | | || |||||||||||||| ||||||||| ||||
Sbjct 589 TACTTAGCAGGATTACTATGGTGACAACCCATCATCAGTAGGGTATAACTAACCTATCTC 530
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| | ||||||||||||||||| |||||||||| | ||||||||||| ||| ||| |
Sbjct 529 ACAATGGTCTAAACCCAGCTCAAGTTCCCTATTGGCGGGTGAACAATGCAATACTT-GTG 471
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACAT 153
||||||||||| ||||||| ||||||| ||||
Sbjct 470 AATTCTGCTTCACAATGATAGAAAGAGCCAACAT 437
>seq6755
Length=1376598
Score = 131 bits (144), Expect = 3e-28
Identities = 148/197 (75%), Gaps = 1/197 (1%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||||| || ||||| ||| | || | || | |||||||| | | ||| |||| ||
Sbjct 1226647 TCATCACTAAGGTAAGACTCATCTTTTCCACAATGGTCTAAATCAATTTCATATTCCTTA 1226588
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
| ||||||||||||||||||| | |||||||| ||| || ||||||||| || |
Sbjct 1226587 TCAGTGGGTGAACAATCCAACTCAAGGTGAATTCTGTTTCACAATAATAGGAAGAACCAA 1226528
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
||| |||||| |||||| | | || |||||||| ||||| ||||||| || || | |
Sbjct 1226527 CATTGAAGGAACAAAAAACCATGT-GCTATGAATGCTTGTTCTCCACAAGTCAATTGTTC 1226469
Query 211 CTGTGGTAACTTTTCTG 227
|||| |||||||||||
Sbjct 1226468 TTGTGTTAACTTTTCTG 1226452
>seq9817
Length=7715
Score = 127 bits (140), Expect = 3e-27
Identities = 131/170 (77%), Gaps = 1/170 (1%)
Strand=Plus/Plus
Query 66 GTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCT 125
||||||| | |||||| | ||| |||||||| ||||||||| ||| |||| ||||||
Sbjct 3779 GTCTAAATCTAGCTCATGATCCTTATTAGTGAGTGAACAATTCAATGCTTTTAAAATTCT 3838
Query 126 GCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACG 185
||||| | || ||||| | | ||| ||||||||||||||| || ||||||| |
Sbjct 3839 GCTTCATAAAGAGTGGAAGTGGCAACACTGAAGGATCAAAAAGCTGAGTTCCTATGAATG 3898
Query 186 CTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCT 235
|||| ||||| |||||||||||||||||| ||||||| ||| |||
Sbjct 3899 GTTGGACATGACAAGTCAGTTATCCCTGTGGTAA-TTTTCTGACACTTCT 3947
>seq22921
Length=120394
Score = 123 bits (136), Expect = 4e-26
Identities = 153/209 (73%), Gaps = 13/209 (6%)
Strand=Plus/Plus
Query 42 GTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGA 101
|||||| | | |||||||||| | |||||||||||||| ||| || || || || ||
Sbjct 105181 GTAAAAGCAGCTTGTCTCATGATAATTTAAACCCAGCTCACATTCTCTCTTGGTAGGGGA 105240
Query 102 ACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAG------AGCCGACATCG 155
|||||||| ||| || |||||| || || ||| | | || | || |
Sbjct 105241 ACAATCCAGTTCTT---GA----TGCTTCATAATAATGGGAGGGAGGGGAACCAATATTG 105293
Query 156 AAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTG 215
||| |||| ||||||| ||| ||||||| ||||||||||| ||||||| ||||| || ||
Sbjct 105294 AAGAATCAGAAAGCAATGTCTCTATGAATGCTTGGCTGCCTCAAGCCATTTATCTCTATG 105353
Query 216 GTAACTTTTCTGGCACCTCTAGCCTCAAA 244
|||||| |||| || |||| || | |||
Sbjct 105354 TTAACTTCTCTGACAGCTCTTGCTTAAAA 105382
>seq15247
Length=1353484
Score = 105 bits (116), Expect = 1e-20
Identities = 64/68 (94%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||
Sbjct 104934 TCATCAGTAGGGTAAAACTAACCTGTCTCACAATGGTCTAATCCCAGCTCACGTTCCCTA 104875
Query 91 TTAGTGGG 98
||||||||
Sbjct 104874 TTAGTGGG 104867
>seq15384
Length=2181830
Score = 102 bits (112), Expect = 1e-19
Identities = 120/160 (75%), Gaps = 3/160 (2%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||| || ||| ||||||||| |||||| | | ||| ||| ||||| | | ||||| |
Sbjct 1533315 TCATTAGCAGGTTAAAACTAATCTGTCTTACAATGGTTTAAGCCCAGTTTATGTTCCTTG 1533256
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
||| ||||| ||||||||||| |||| ||| ||| |||| |||| ||| |||| |
Sbjct 1533255 TTAATGGGTAAACAATCCAACTCTTAGTGAACTCTACTTCATAGTGATGGGA--AGCCAA 1533198
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGG 190
| ||||||||||||| | || ||||||| ||||||
Sbjct 1533197 TACTGAAGGATCAAAAA-TTATATCACTATGAATGCTTGG 1533159
>seq30454
Length=3642745
Score = 86.0 bits (94), Expect = 1e-14
Identities = 80/102 (78%), Gaps = 11/102 (11%)
Strand=Plus/Plus
Query 134 ATGATAGGAAGAGCCGACATCGAAGGAT--CAAAAAGCAACGTCGCTATGAACGCTTGGC 191
||||||||||||||| |||||||||||| ||||| || || |||||||| |||
Sbjct 1872590 ATGATAGGAAGAGCCAACATCGAAGGATAAAAAAAACAAATGTGGCTATGAATGCT---- 1872645
Query 192 TGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCT 233
|||| ||||||||| | |||||||||||||| |||||
Sbjct 1872646 -----CAAGTCAGTTATCCTTATGGTAACTTTTCTGACACCT 1872682
>seq7089
Length=3951797
Score = 82.4 bits (90), Expect = 1e-13
Identities = 79/101 (78%), Gaps = 3/101 (3%)
Strand=Plus/Plus
Query 122 TTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATG 181
||||||||| | | ||| | ||||| ||| |||||||||||||||| ||| |||||
Sbjct 1635066 TTCTGCTTCTG---GGTAGCAGGAGCCAACAATGAAGGATCAAAAAGCACAGTCACTATG 1635122
Query 182 AACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTT 222
| |||||||| || ||||||||||| ||||| |||||
Sbjct 1635123 GAAACTTGGCTGTTACTTGCCAGTTATCCTTGTGGCAACTT 1635163
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854092638144
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |