Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17]
35,974 sequences; 3,174,693,010 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq6823 149 1e-33
seq53 141 2e-31
seq15971 122 2e-25
seq15277 87.8 3e-15
seq6940 87.8 3e-15
seq23036 77.0 6e-12
>seq6823
Length=3687145
Score = 149 bits (164), Expect = 1e-33
Identities = 190/258 (74%), Gaps = 3/258 (1%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| || | ||||| ||||||||| ||||||
Sbjct 2374569 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGATCTGTG 2374512
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| ||| || ||||||||||| | || | || | |
Sbjct 2374511 ATGCCCTTAGATGTCCAGGGCTGCATGCTTGCTACACTGACTGGCTCAGTGTGTGCCTAC 2374452
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| |||| ||| |||||| | | || | | ||||| ||||||| | | ||||
Sbjct 2374451 CCTACACCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 2374392
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
|||||||| | | || ||||||| | |||||| ||| ||||| | | |||||||||
Sbjct 2374391 CAATTATTCCCCAAGAATGAGGAATTCTCAGTAAGTGCGGGTCATAACCTTGCGTTGATT 2374332
Query 311 ACGTCCCTGCCCTTTGTA 328
| |||||||||||||||
Sbjct 2374331 AAATCCCTGCCCTTTGTA 2374314
>seq53
Length=4446849
Score = 141 bits (156), Expect = 2e-31
Identities = 190/259 (73%), Gaps = 4/259 (2%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
||||| |||||||| | ||| | |||| || | ||||| ||||||||||||||||
Sbjct 3746026 CTTCTAAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 3746083
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCA-ACGAGTTCATC 189
||| |||||||||| | |||| |||| ||||||||||||| | || || || | |
Sbjct 3746084 ATGTCCTTAGATGTCCAGGGCTGCACCCGCGCTACACTGAGTGGCTCAGCCGTGTGCCTA 3746143
Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249
||| ||||| ||| |||||| | | || | | | ||| ||||||| | | |||
Sbjct 3746144 CCCTACGCCGGCAGGCACGGGTAACCCGTTGAACCACATTTGTGATGGGGATTGGGGATT 3746203
Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309
||||||||| | | | ||| |||||| || |||||| | | ||||| ||| | |||||
Sbjct 3746204 GCAATTATTACCCATGAACAAGGAATTCCCAGTAAGTGTGGGTCATAAGCTTCCTTTGAT 3746263
Query 310 TACGTCCCTGCCCTTTGTA 328
|| |||||| ||||||||
Sbjct 3746264 TAAATCCCTGTCCTTTGTA 3746282
>seq15971
Length=175860
Score = 122 bits (134), Expect = 2e-25
Identities = 155/213 (73%), Gaps = 3/213 (1%)
Strand=Plus/Plus
Query 116 AATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAG 175
||||| ||||||||||||||||||||||| | |||| | | || |||||||||| |
Sbjct 17721 AATAATAGGTCTGTGATGCCCTTAGATGTCCAGGGCTAAATGTGCCCTACACTGACTGGC 17780
Query 176 CCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCT 235
|| | || | | || | || |||| | |||| | | || | | | ||| |
Sbjct 17781 TCAGCACGTGCCTATCCA---CTGGCAGGTGCGAGTAACCCATTGAACCCCATTTGTGAT 17837
Query 236 GGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCAT 295
|||||| | |||||||||||| | | |||||||||| || |||||| ||| |||||
Sbjct 17838 GGGGATCAGGGATTGCAATTATTCCATATGAACGAGGAATTCCCAGTAAGTGCGAGTCAT 17897
Query 296 CAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
||| |||||||||| ||||||| ||||||||
Sbjct 17898 AAGCTTGCGTTGATTAAGTCCCTGTCCTTTGTA 17930
>seq15277
Length=881827
Score = 87.8 bits (96), Expect = 3e-15
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 231 GTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGT 290
||| ||||||| | |||||||||||| ||| | |||||||||| || |||||| ||
Sbjct 92628 GTGATGGGGATCGGAAATTGCAATTATTCCTCATGAACGAGGAATTCCCAGTAAGTGCAG 92569
Query 291 GTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
| || ||| |||||||||| ||||||||||||| ||
Sbjct 92568 ATTATAAGCTTGCGTTGATTAAGTCCCTGCCCTTTATA 92531
>seq6940
Length=186021
Score = 87.8 bits (96), Expect = 3e-15
Identities = 69/83 (83%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305
||||||||||||| | | | || ||||||| || |||||| ||| ||||| ||| || |
Sbjct 175977 CATTGCAATTATTCCCCATGAATGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCCT 175918
Query 306 TGATTACGTCCCTGCCCTTTGTA 328
|||||| ||||||||||||||||
Sbjct 175917 TGATTAAGTCCCTGCCCTTTGTA 175895
>seq23036
Length=99705
Score = 77.0 bits (84), Expect = 6e-12
Identities = 134/189 (71%), Gaps = 11/189 (6%)
Strand=Plus/Plus
Query 145 TCTG-GGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAG 203
|||| ||| ||| |||| |||||||||| | || | || | | ||| || | |
Sbjct 70805 TCTGTGGCTGCATGCGCACTACACTGACTGGCTCAGTGTGTGCCTACCCTATGCTAGCAT 70864
Query 204 GTCTGGGTAATCTTGTTAAACTCTGTC-GTGCTGGGGATAG--AGCATTGCAATTATTGC 260
|| ||||||| || ||| ||||| | ||| |||||| | || |||| ||||||| |
Sbjct 70865 GTATGGGTAACCT-GTTGAACTCCATTTGTGTTGGGGAGATCAAGGATTGTAATTATTAC 70923
Query 261 TCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG-ATTACGTCCCTG 319
| | ||| |||||| || | |||| | | ||||| || |||| |||| |||||||
Sbjct 70924 CCATGAACAAGGAATTCCCAATAAGTGTGGGTCATAAG-----GTTGCATTAAGTCCCTG 70978
Query 320 CCCTTTGTA 328
|||||||||
Sbjct 70979 CCCTTTGTA 70987
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 946859254272
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |