Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq6823 149 1e-33 seq53 141 2e-31 seq15971 122 2e-25 seq15277 87.8 3e-15 seq6940 87.8 3e-15 seq23036 77.0 6e-12 >seq6823 Length=3687145 Score = 149 bits (164), Expect = 1e-33 Identities = 190/258 (74%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| ||||||||| |||||| Sbjct 2374569 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGATCTGTG 2374512 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||| || ||||||||||| | || | || | | Sbjct 2374511 ATGCCCTTAGATGTCCAGGGCTGCATGCTTGCTACACTGACTGGCTCAGTGTGTGCCTAC 2374452 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| |||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 2374451 CCTACACCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 2374392 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | || ||||||| | |||||| ||| ||||| | | ||||||||| Sbjct 2374391 CAATTATTCCCCAAGAATGAGGAATTCTCAGTAAGTGCGGGTCATAACCTTGCGTTGATT 2374332 Query 311 ACGTCCCTGCCCTTTGTA 328 | ||||||||||||||| Sbjct 2374331 AAATCCCTGCCCTTTGTA 2374314 >seq53 Length=4446849 Score = 141 bits (156), Expect = 2e-31 Identities = 190/259 (73%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||| |||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 3746026 CTTCTAAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 3746083 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCA-ACGAGTTCATC 189 ||| |||||||||| | |||| |||| ||||||||||||| | || || || | | Sbjct 3746084 ATGTCCTTAGATGTCCAGGGCTGCACCCGCGCTACACTGAGTGGCTCAGCCGTGTGCCTA 3746143 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||| ||||| ||| |||||| | | || | | | ||| ||||||| | | ||| Sbjct 3746144 CCCTACGCCGGCAGGCACGGGTAACCCGTTGAACCACATTTGTGATGGGGATTGGGGATT 3746203 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||||||| | | | ||| |||||| || |||||| | | ||||| ||| | ||||| Sbjct 3746204 GCAATTATTACCCATGAACAAGGAATTCCCAGTAAGTGTGGGTCATAAGCTTCCTTTGAT 3746263 Query 310 TACGTCCCTGCCCTTTGTA 328 || |||||| |||||||| Sbjct 3746264 TAAATCCCTGTCCTTTGTA 3746282 >seq15971 Length=175860 Score = 122 bits (134), Expect = 2e-25 Identities = 155/213 (73%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 116 AATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAG 175 ||||| ||||||||||||||||||||||| | |||| | | || |||||||||| | Sbjct 17721 AATAATAGGTCTGTGATGCCCTTAGATGTCCAGGGCTAAATGTGCCCTACACTGACTGGC 17780 Query 176 CCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCT 235 || | || | | || | || |||| | |||| | | || | | | ||| | Sbjct 17781 TCAGCACGTGCCTATCCA---CTGGCAGGTGCGAGTAACCCATTGAACCCCATTTGTGAT 17837 Query 236 GGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCAT 295 |||||| | |||||||||||| | | |||||||||| || |||||| ||| ||||| Sbjct 17838 GGGGATCAGGGATTGCAATTATTCCATATGAACGAGGAATTCCCAGTAAGTGCGAGTCAT 17897 Query 296 CAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| |||||||||| ||||||| |||||||| Sbjct 17898 AAGCTTGCGTTGATTAAGTCCCTGTCCTTTGTA 17930 >seq15277 Length=881827 Score = 87.8 bits (96), Expect = 3e-15 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 231 GTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGT 290 ||| ||||||| | |||||||||||| ||| | |||||||||| || |||||| || Sbjct 92628 GTGATGGGGATCGGAAATTGCAATTATTCCTCATGAACGAGGAATTCCCAGTAAGTGCAG 92569 Query 291 GTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | || ||| |||||||||| ||||||||||||| || Sbjct 92568 ATTATAAGCTTGCGTTGATTAAGTCCCTGCCCTTTATA 92531 >seq6940 Length=186021 Score = 87.8 bits (96), Expect = 3e-15 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 ||||||||||||| | | | || ||||||| || |||||| ||| ||||| ||| || | Sbjct 175977 CATTGCAATTATTCCCCATGAATGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCCT 175918 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 |||||| |||||||||||||||| Sbjct 175917 TGATTAAGTCCCTGCCCTTTGTA 175895 >seq23036 Length=99705 Score = 77.0 bits (84), Expect = 6e-12 Identities = 134/189 (71%), Gaps = 11/189 (6%) Strand=Plus/Plus Query 145 TCTG-GGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAG 203 |||| ||| ||| |||| |||||||||| | || | || | | ||| || | | Sbjct 70805 TCTGTGGCTGCATGCGCACTACACTGACTGGCTCAGTGTGTGCCTACCCTATGCTAGCAT 70864 Query 204 GTCTGGGTAATCTTGTTAAACTCTGTC-GTGCTGGGGATAG--AGCATTGCAATTATTGC 260 || ||||||| || ||| ||||| | ||| |||||| | || |||| ||||||| | Sbjct 70865 GTATGGGTAACCT-GTTGAACTCCATTTGTGTTGGGGAGATCAAGGATTGTAATTATTAC 70923 Query 261 TCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG-ATTACGTCCCTG 319 | | ||| |||||| || | |||| | | ||||| || |||| |||| ||||||| Sbjct 70924 CCATGAACAAGGAATTCCCAATAAGTGTGGGTCATAAG-----GTTGCATTAAGTCCCTG 70978 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 70979 CCCTTTGTA 70987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946859254272