Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17]
35,974 sequences; 3,174,693,010 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq7022 356 8e-96
seq222 221 4e-55
seq32394 212 2e-52
seq197 147 7e-33
seq15618 107 6e-21
seq7368 102 3e-19
seq370 91.5 5e-16
seq1464 78.8 3e-12
>seq7022
Length=3809108
Score = 356 bits (394), Expect = 8e-96
Identities = 258/297 (87%), Gaps = 1/297 (0%)
Strand=Plus/Minus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|| |||| |||||||||||||||| ||| || |||| | | ||| ||||||| |||||
Sbjct 2848389 CTACCACATATTCTACACCTCTCATGTCTCTTTACAATGCCAGACAAGAGTCACACTCAA 2848330
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
|||| ||||||||||| |||||||| | |||||| ||||||||||| ||||||| ||||
Sbjct 2848329 CAGGATCTTCTTTCCCA-CTGATTCCACTAAGCCCATTCCCTTGGCTATGGTTTCACTAG 2848271
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
||||||| ||| ||||||||||||| | || |||||||| | | | ||| ||||||||||
Sbjct 2848270 ATAGTAGGTAGAGACAGTGGGAATCACATTCATCCATTCGTACACATCATTAATTAGATG 2848211
Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476
| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 2848210 ATGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCTGCTCTTAA 2848151
Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||
Sbjct 2848150 TTGAATTTCTTCAATTTGACATTCAGAGCACTAGGCAGAAATCACATTGTATCAACA 2848094
>seq222
Length=3347927
Score = 221 bits (244), Expect = 4e-55
Identities = 160/185 (86%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|| ||||||| ||||||||||||| ||| ||||| | | ||||||||||||||||||
Sbjct 500630 CTTCCACTTACTCTACACCTCTCATGTCTCTTCACTGTGCCAGACTAGAGTCAAGCTCAA 500571
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
||||||||||||||||| |||||| | |||||||| ||||||||||||||| || |||||
Sbjct 500570 CAGGGTCTTCTTTCCCCTCTGATTACACCAAGCCCATTCCCTTGGCTGTGGCTTTGCTAG 500511
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
||||||| || ||||| ||||||||| || | |||||||||| ||||||||||||||||
Sbjct 500510 ATAGTAGGTAAGGACATAGGGAATCTCCTTCAGCCATTCATGCACGTCACTAATTAGATG 500451
Query 417 ACGAG 421
| |||
Sbjct 500450 AGGAG 500446
>seq32394
Length=1918
Score = 212 bits (234), Expect = 2e-52
Identities = 145/162 (90%), Gaps = 1/162 (1%)
Strand=Plus/Minus
Query 339 TGGCTGT-GGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 397
||||||| ||| | |||||||||||| |||||||||||||||||| ||| ||||||||||
Sbjct 1269 TGGCTGTTGGTCTAGCTAGATAGTAGGTAGGGACAGTGGGAATCTTGTTCATCCATTCAT 1210
Query 398 GCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC 457
| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1209 GTGCGTCACTAATTAGACGACTAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC 1150
Query 458 GCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATT 499
| ||||||| | | || ||||||||||||||||||| |||
Sbjct 1149 GTGGTTTACCTGAGTTTCATTGAATTTCTTCACTTTGAGATT 1108
>seq197
Length=2052443
Score = 147 bits (162), Expect = 7e-33
Identities = 186/256 (73%), Gaps = 16/256 (6%)
Strand=Plus/Plus
Query 282 TAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGG 341
|||| ||||| |||||| | | |||||||||| |||||| |||||| | || |||| |
Sbjct 269381 TAGAATCAAGTTCAACAAGCTTTTCTTTCCCCACTGATTGCGCCAAACTAATTTCCTTAG 269440
Query 342 CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGC 401
| | |||| |||||||||| | |||||||||| || ||| || || |||||
Sbjct 269441 CAAGGTTTTCATTAGATAGTAGGTCAAAACAGTGGGAAACTTGTTCATTCAATCATGAAT 269500
Query 402 GTCACTAATTAGATGACGAGGCATTTGGC----TACCTTAAGAGAGTCATAGTTACTCCC 457
||||||||||||||| | |||||| | ||||||| ||||||||||||| |||
Sbjct 269501 ATCACTAATTAGATGATAACACATTTGACTGATTACCTTA--AGAGTCATAGTTAGTCCT 269558
Query 458 GCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAA 517
||| |||| | | | ||||||||||||||||| | ||| ||||||||
Sbjct 269559 GCCATTTATTCATGTTCCATTGAATTTCTTCACTTT----------GTACTAGGCAGAAA 269608
Query 518 TCACATTGCGTCAACA 533
||| |||| |||| ||
Sbjct 269609 TCATATTGTGTCAGCA 269624
>seq15618
Length=120643
Score = 107 bits (118), Expect = 6e-21
Identities = 88/107 (82%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| ||||| || |||| |||||| |||| |||| ||||||||||||||| ||| |
Sbjct 76091 CTTCTGCTCCACGGGAGGTTTCTGCCCTCCCTGAGCTTGCCTTAGGACACCTGCATTACG 76150
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113
|||| |||| ||| ||||||||| || ||||||||||||||| ||||
Sbjct 76151 GTTTGACAGGTGTACCGCCCCAGTCAGACTCCCCACCTGACACTGTC 76197
>seq7368
Length=47750
Score = 102 bits (112), Expect = 3e-19
Identities = 123/165 (75%), Gaps = 2/165 (1%)
Strand=Plus/Minus
Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338
||| ||| | ||||| |||||||| |||||||| | || || || |||| ||| |
Sbjct 5747 GACCAGAATTAAGCTTAACAGGGTTTTCTTTCCATGTTGTTTTTACCGGGCCCTTTCTGT 5688
Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398
| || ||||||| | || | || | |||| || |||||||||| || ||||| || |
Sbjct 5687 -GACTTTGGTTTCACCAGGTTATA-AGAGGGCCAATGGGAATCTCATTCATCCACTCCTA 5630
Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAG 443
|| |||| ||||||| || ||| ||||||||||| |||||| ||
Sbjct 5629 TGCATCACCAATTAGAGGATGAGACATTTGGCTACTTTAAGAAAG 5585
>seq370
Length=274662
Score = 91.5 bits (100), Expect = 5e-16
Identities = 101/132 (77%), Gaps = 2/132 (2%)
Strand=Plus/Minus
Query 405 ACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCG-CCGTT 463
||||||||||||| ||||||| | || |||||||||| |||||||||| | | ||
Sbjct 79710 ACTAATTAGATGATAAGGCATTAGATGACTTTAAGAGAGTTATAGTTACTCATGTTCATT 79651
Query 464 TACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACAT 523
|||| | ||| | |||||||||| ||||| ||| ||| | ||||||||||||| ||
Sbjct 79650 TACCTGAACTTAGCCAAATTTCTTCA-TTTGATATTAAGAATAGTGGGCAGAAATCATAT 79592
Query 524 TGCGTCAACATC 535
| |||| |||
Sbjct 79591 CCCATCAATATC 79580
Score = 78.8 bits (86), Expect = 3e-12
Identities = 91/122 (75%), Gaps = 2/122 (2%)
Strand=Plus/Minus
Query 402 GTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCG 461
|||| || |||| |||| |||| | |||||| |||||||| | ||| ||| || || |
Sbjct 164690 GTCATTAGTTAGGTGACAAGGCCTGTGGCTAACTTAAGAG--TAATAATTATTCTTGCTG 164633
Query 462 TTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 521
|||||| || || |||||| ||| ||||||||| |||| | |||||||||||
Sbjct 164632 TTTACCTGCATTTCACTGAATTCCTTTCCTTTGACATGCAGAATGTTAGGCAGAAATCAT 164573
Query 522 AT 523
||
Sbjct 164572 AT 164571
>seq1464
Length=14443
Score = 78.8 bits (86), Expect = 3e-12
Identities = 79/103 (77%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 431 TACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCAC 490
|||| ||| | |||||| ||||| | | |||||| | ||| ||||||||||||||
Sbjct 11911 TACCATAAAAAAGTCATCATTACTTTCATCATTTACCTGTACTTCTTTGAATTTCTTCAC 11852
Query 491 TTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
|| |||||||||||||| || |||||| ||| |||||||
Sbjct 11851 TTGGACATTCAGAGCACAAGGTAGAAATTGCATCTTGTCAACA 11809
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1634611753152
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |