Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq7022 356 8e-96 seq222 221 4e-55 seq32394 212 2e-52 seq197 147 7e-33 seq15618 107 6e-21 seq7368 102 3e-19 seq370 91.5 5e-16 seq1464 78.8 3e-12 >seq7022 Length=3809108 Score = 356 bits (394), Expect = 8e-96 Identities = 258/297 (87%), Gaps = 1/297 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 || |||| |||||||||||||||| ||| || |||| | | ||| ||||||| ||||| Sbjct 2848389 CTACCACATATTCTACACCTCTCATGTCTCTTTACAATGCCAGACAAGAGTCACACTCAA 2848330 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||| ||||||||||| |||||||| | |||||| ||||||||||| ||||||| |||| Sbjct 2848329 CAGGATCTTCTTTCCCA-CTGATTCCACTAAGCCCATTCCCTTGGCTATGGTTTCACTAG 2848271 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| ||| ||||||||||||| | || |||||||| | | | ||| |||||||||| Sbjct 2848270 ATAGTAGGTAGAGACAGTGGGAATCACATTCATCCATTCGTACACATCATTAATTAGATG 2848211 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 | ||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 2848210 ATGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCTGCTCTTAA 2848151 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||| |||||||||||||||||| |||||||||||||||| |||||| Sbjct 2848150 TTGAATTTCTTCAATTTGACATTCAGAGCACTAGGCAGAAATCACATTGTATCAACA 2848094 >seq222 Length=3347927 Score = 221 bits (244), Expect = 4e-55 Identities = 160/185 (86%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 || ||||||| ||||||||||||| ||| ||||| | | |||||||||||||||||| Sbjct 500630 CTTCCACTTACTCTACACCTCTCATGTCTCTTCACTGTGCCAGACTAGAGTCAAGCTCAA 500571 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||||| |||||| | |||||||| ||||||||||||||| || ||||| Sbjct 500570 CAGGGTCTTCTTTCCCCTCTGATTACACCAAGCCCATTCCCTTGGCTGTGGCTTTGCTAG 500511 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| || ||||| ||||||||| || | |||||||||| |||||||||||||||| Sbjct 500510 ATAGTAGGTAAGGACATAGGGAATCTCCTTCAGCCATTCATGCACGTCACTAATTAGATG 500451 Query 417 ACGAG 421 | ||| Sbjct 500450 AGGAG 500446 >seq32394 Length=1918 Score = 212 bits (234), Expect = 2e-52 Identities = 145/162 (90%), Gaps = 1/162 (1%) Strand=Plus/Minus Query 339 TGGCTGT-GGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 397 ||||||| ||| | |||||||||||| |||||||||||||||||| ||| |||||||||| Sbjct 1269 TGGCTGTTGGTCTAGCTAGATAGTAGGTAGGGACAGTGGGAATCTTGTTCATCCATTCAT 1210 Query 398 GCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC 457 | ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct 1209 GTGCGTCACTAATTAGACGACTAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC 1150 Query 458 GCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATT 499 | ||||||| | | || ||||||||||||||||||| ||| Sbjct 1149 GTGGTTTACCTGAGTTTCATTGAATTTCTTCACTTTGAGATT 1108 >seq197 Length=2052443 Score = 147 bits (162), Expect = 7e-33 Identities = 186/256 (73%), Gaps = 16/256 (6%) Strand=Plus/Plus Query 282 TAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGG 341 |||| ||||| |||||| | | |||||||||| |||||| |||||| | || |||| | Sbjct 269381 TAGAATCAAGTTCAACAAGCTTTTCTTTCCCCACTGATTGCGCCAAACTAATTTCCTTAG 269440 Query 342 CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGC 401 | | |||| |||||||||| | |||||||||| || ||| || || ||||| Sbjct 269441 CAAGGTTTTCATTAGATAGTAGGTCAAAACAGTGGGAAACTTGTTCATTCAATCATGAAT 269500 Query 402 GTCACTAATTAGATGACGAGGCATTTGGC----TACCTTAAGAGAGTCATAGTTACTCCC 457 ||||||||||||||| | |||||| | ||||||| ||||||||||||| ||| Sbjct 269501 ATCACTAATTAGATGATAACACATTTGACTGATTACCTTA--AGAGTCATAGTTAGTCCT 269558 Query 458 GCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAA 517 ||| |||| | | | ||||||||||||||||| | ||| |||||||| Sbjct 269559 GCCATTTATTCATGTTCCATTGAATTTCTTCACTTT----------GTACTAGGCAGAAA 269608 Query 518 TCACATTGCGTCAACA 533 ||| |||| |||| || Sbjct 269609 TCATATTGTGTCAGCA 269624 >seq15618 Length=120643 Score = 107 bits (118), Expect = 6e-21 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| |||||| |||| |||| ||||||||||||||| ||| | Sbjct 76091 CTTCTGCTCCACGGGAGGTTTCTGCCCTCCCTGAGCTTGCCTTAGGACACCTGCATTACG 76150 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| |||| ||| ||||||||| || ||||||||||||||| |||| Sbjct 76151 GTTTGACAGGTGTACCGCCCCAGTCAGACTCCCCACCTGACACTGTC 76197 >seq7368 Length=47750 Score = 102 bits (112), Expect = 3e-19 Identities = 123/165 (75%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 ||| ||| | ||||| |||||||| |||||||| | || || || |||| ||| | Sbjct 5747 GACCAGAATTAAGCTTAACAGGGTTTTCTTTCCATGTTGTTTTTACCGGGCCCTTTCTGT 5688 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398 | || ||||||| | || | || | |||| || |||||||||| || ||||| || | Sbjct 5687 -GACTTTGGTTTCACCAGGTTATA-AGAGGGCCAATGGGAATCTCATTCATCCACTCCTA 5630 Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAG 443 || |||| ||||||| || ||| ||||||||||| |||||| || Sbjct 5629 TGCATCACCAATTAGAGGATGAGACATTTGGCTACTTTAAGAAAG 5585 >seq370 Length=274662 Score = 91.5 bits (100), Expect = 5e-16 Identities = 101/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 405 ACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCG-CCGTT 463 ||||||||||||| ||||||| | || |||||||||| |||||||||| | | || Sbjct 79710 ACTAATTAGATGATAAGGCATTAGATGACTTTAAGAGAGTTATAGTTACTCATGTTCATT 79651 Query 464 TACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACAT 523 |||| | ||| | |||||||||| ||||| ||| ||| | ||||||||||||| || Sbjct 79650 TACCTGAACTTAGCCAAATTTCTTCA-TTTGATATTAAGAATAGTGGGCAGAAATCATAT 79592 Query 524 TGCGTCAACATC 535 | |||| ||| Sbjct 79591 CCCATCAATATC 79580 Score = 78.8 bits (86), Expect = 3e-12 Identities = 91/122 (75%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 402 GTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCG 461 |||| || |||| |||| |||| | |||||| |||||||| | ||| ||| || || | Sbjct 164690 GTCATTAGTTAGGTGACAAGGCCTGTGGCTAACTTAAGAG--TAATAATTATTCTTGCTG 164633 Query 462 TTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 521 |||||| || || |||||| ||| ||||||||| |||| | ||||||||||| Sbjct 164632 TTTACCTGCATTTCACTGAATTCCTTTCCTTTGACATGCAGAATGTTAGGCAGAAATCAT 164573 Query 522 AT 523 || Sbjct 164572 AT 164571 >seq1464 Length=14443 Score = 78.8 bits (86), Expect = 3e-12 Identities = 79/103 (77%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 431 TACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCAC 490 |||| ||| | |||||| ||||| | | |||||| | ||| |||||||||||||| Sbjct 11911 TACCATAAAAAAGTCATCATTACTTTCATCATTTACCTGTACTTCTTTGAATTTCTTCAC 11852 Query 491 TTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 || |||||||||||||| || |||||| ||| ||||||| Sbjct 11851 TTGGACATTCAGAGCACAAGGTAGAAATTGCATCTTGTCAACA 11809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634611753152