Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17]
35,974 sequences; 3,174,693,010 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq500 246 9e-63
seq35680 242 1e-61
seq17168 167 7e-39
seq15440 132 1e-28
seq7085 120 9e-25
seq25998 111 5e-22
seq306 102 2e-19
seq15434 96.9 1e-17
>seq500
Length=76045
Score = 246 bits (272), Expect = 9e-63
Identities = 227/284 (80%), Gaps = 5/284 (2%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59
|||||||||||||||||| | || |||||||| ||| ||| ||||| | |||||||||
Sbjct 75572 GTACTCATTCCAATTACAGGGCCTCAAAAGAGTCCTCTATTGTTATTTTTCGTCACTACC 75513
Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119
|||||| || |||| ||||||||||| | ||||||||||||||||||||||||||||| |
Sbjct 75512 TCCCCGGGTGGGGAGTGGGTAATTTGAGTGCCTGCTGCCTTCCTTGGATGTGGTAGCCAT 75453
Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179
||||||||||||||||| ||||||||||||| ||||||| |||||| | |||||||||
Sbjct 75452 TTCTCAGGCTCCCTCTCTGGAATCGAACCCTGATTCCCCAACACCCGTGGTTACCATGGT 75393
Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239
|||| |||||| |||||||||||||||||| || |||| |||| ||| |
Sbjct 75392 AGGCATGGCAAGTACCATAGAAAGTTGATAGGGCAGATGTTCAAATGGGTCATCACCGCC 75333
Query 240 TCAAG--GCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA 279
| | | |||||||| | ||||||| || |||||||
Sbjct 75332 ACGGGGAGGCATGCGATCGGCCCAAAGTTATCTAGAGTCACCAA 75289
>seq35680
Length=2246
Score = 242 bits (268), Expect = 1e-61
Identities = 172/196 (88%), Gaps = 1/196 (1%)
Strand=Plus/Plus
Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102
||||| | ||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 335 TATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCC 394
Query 103 TTGGATGTGGTAGCCGTTTCT-CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTT 161
||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 395 TTGGATGTGGTAGCCGTTTCTCCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTC 454
Query 162 ACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTT 221
|||||| | |||||||||||| ||||||||||||||||||||||||| ||
Sbjct 455 ACCCGTGGTCACCATGGTAGGCACGGCAAGTACCATCGAAAGTTGATAGGGCAGACGTTC 514
Query 222 GAATGAACCATCGCCG 237
||||| ||||||||
Sbjct 515 GAATGGGTCATCGCCG 530
Score = 185 bits (204), Expect = 3e-44
Identities = 141/165 (85%), Gaps = 5/165 (3%)
Strand=Plus/Plus
Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATC----AAAT 399
|||||||||||||||||||||||||| |||||||| |||| | || | | | |||
Sbjct 709 GCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGGGAGCGAGCGACCAAAG 768
Query 400 AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAG 459
||| ||||||||||||||||||||||||||||||||||||| | | | |||||||
Sbjct 769 GAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGTGTACTTAG 828
Query 460 ACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 829 ACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 872
>seq17168
Length=4014
Score = 167 bits (184), Expect = 7e-39
Identities = 139/168 (83%), Gaps = 9/168 (5%)
Strand=Plus/Plus
Query 345 CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTAT----CAAATA 400
||||||||||||||||||||||||| |||||||| |||| | || | | ||||
Sbjct 1454 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGGGAGCAAGTGACCAAAGG 1513
Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGA 460
||| ||||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct 1514 AACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCTGTCATGTGTACTTAGA 1573
Query 461 ----CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1574 CATGCATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 1620
>seq15440
Length=1812893
Score = 132 bits (146), Expect = 1e-28
Identities = 84/91 (92%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102
||||| | |||||| ||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 214955 TATTTTTCTTCACTAACTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCC 215014
Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCT 133
||||||||||||||| |||||||||||||||
Sbjct 215015 TTGGATGTGGTAGCCCTTTCTCAGGCTCCCT 215045
>seq7085
Length=2930454
Score = 120 bits (132), Expect = 9e-25
Identities = 127/162 (78%), Gaps = 13/162 (8%)
Strand=Plus/Minus
Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA---AGGTACT----ATC 395
||||| |||| | ||||||||||||| ||||| || |||| | ||| || | |
Sbjct 1339696 AGCATATATTGGTTCTAGAATTACCA--GTTATACAAGTAGGAGGAAGGACCTCGCAACC 1339639
Query 396 AAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT-AGAT-TGCTTAT 453
||| ||| |||||||||||||||| ||||| |||||||||||| || || | |
Sbjct 1339638 AAAAGAACCATAACTGATTTAATGAATCATTCAGAGTTTCACTGTACCAGCCATG--TGT 1339581
Query 454 ACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGAC 495
||||||||||| |||||||||||||||||||||||||||||
Sbjct 1339580 ACTTAGACATGACTGGCTTAATCTTTGAGACAAGCATATGAC 1339539
>seq25998
Length=1917
Score = 111 bits (122), Expect = 5e-22
Identities = 91/110 (83%), Gaps = 7/110 (6%)
Strand=Plus/Plus
Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454
|||| ||| ||||||||||||||||||||||||||||||||||||| | | | ||
Sbjct 327 CAAAGGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGTGTA 386
Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||||||||| |||||||||||||||||||| |||||| |||
Sbjct 387 CTTAGACATGCAT------ATCTTTGAGACAAGCATATG-CTACTGACAG 429
>seq306
Length=3164110
Score = 102 bits (112), Expect = 2e-19
Identities = 128/172 (74%), Gaps = 13/172 (8%)
Strand=Plus/Minus
Query 338 TTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACT----A 393
|| || | |||||||||||||||||||| || | | ||||| || | |||| || |
Sbjct 1191272 TTATTGGAATGTATTAGCTCTAGAATTATCATGATGATCCAAGTTGGAAGGAGCTCATAA 1191213
Query 394 TCAAATAAACGATAACTGATTTAA---TGAGCCATTCGCAGTTTCACTGTATAGATTGCT 450
||||| ||| ||||||||||||| | || |||| |||| |||| ||| | ||
Sbjct 1191212 TCAAAAGAACCATAACTGATTTAAAAGTAAGTCATTTGCAGCTTCATTGT----ACTGGC 1191157
Query 451 TATACTTAGACAT-GCATGGCTTAATCTTTGAGACAAGCATATG-ACTACTG 500
| || || |||| ||||| |||| |||||||||||||||||| | |||||
Sbjct 1191156 TGTATGTACACATCGCATGATTTAAGCTTTGAGACAAGCATATGTAATACTG 1191105
>seq15434
Length=459246
Score = 96.9 bits (106), Expect = 1e-17
Identities = 116/157 (74%), Gaps = 2/157 (1%)
Strand=Plus/Minus
Query 3 ACTCATTCCAATTACAAGACCC--AAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
|||||||||| |||||||||| |||| | || ||| ||||| | |||||||||
Sbjct 442770 ACTCATTCCAGTTACAAGACCTTGAAAAAAATTCTATATTGTTATTTTTCATCACTACCT 442711
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
| | || |||| | |||||| | ||||||||| |||| |||||||| |||| |
Sbjct 442710 TCTCAGGTTGGGAGGTGATAATTTTTGTGCCTGCTGCTTTCCATGGATGTGATAGCTACT 442651
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCC 157
| ||||||||||||||| | || ||| | ||||||
Sbjct 442650 TTTCAGGCTCCCTCTCCAAATTCAAACTGTGATTCCC 442614
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1509856648704
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |