Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq500 246 9e-63 seq35680 242 1e-61 seq17168 167 7e-39 seq15440 132 1e-28 seq7085 120 9e-25 seq25998 111 5e-22 seq306 102 2e-19 seq15434 96.9 1e-17 >seq500 Length=76045 Score = 246 bits (272), Expect = 9e-63 Identities = 227/284 (80%), Gaps = 5/284 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||||||||| | || |||||||| ||| ||| ||||| | ||||||||| Sbjct 75572 GTACTCATTCCAATTACAGGGCCTCAAAAGAGTCCTCTATTGTTATTTTTCGTCACTACC 75513 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||| || |||| ||||||||||| | ||||||||||||||||||||||||||||| | Sbjct 75512 TCCCCGGGTGGGGAGTGGGTAATTTGAGTGCCTGCTGCCTTCCTTGGATGTGGTAGCCAT 75453 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||| ||||||||||||| ||||||| |||||| | ||||||||| Sbjct 75452 TTCTCAGGCTCCCTCTCTGGAATCGAACCCTGATTCCCCAACACCCGTGGTTACCATGGT 75393 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| |||||| |||||||||||||||||| || |||| |||| ||| | Sbjct 75392 AGGCATGGCAAGTACCATAGAAAGTTGATAGGGCAGATGTTCAAATGGGTCATCACCGCC 75333 Query 240 TCAAG--GCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA 279 | | | |||||||| | ||||||| || ||||||| Sbjct 75332 ACGGGGAGGCATGCGATCGGCCCAAAGTTATCTAGAGTCACCAA 75289 >seq35680 Length=2246 Score = 242 bits (268), Expect = 1e-61 Identities = 172/196 (88%), Gaps = 1/196 (1%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | ||||||||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct 335 TATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCC 394 Query 103 TTGGATGTGGTAGCCGTTTCT-CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTT 161 ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 395 TTGGATGTGGTAGCCGTTTCTCCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTC 454 Query 162 ACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTT 221 |||||| | |||||||||||| ||||||||||||||||||||||||| || Sbjct 455 ACCCGTGGTCACCATGGTAGGCACGGCAAGTACCATCGAAAGTTGATAGGGCAGACGTTC 514 Query 222 GAATGAACCATCGCCG 237 ||||| |||||||| Sbjct 515 GAATGGGTCATCGCCG 530 Score = 185 bits (204), Expect = 3e-44 Identities = 141/165 (85%), Gaps = 5/165 (3%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATC----AAAT 399 |||||||||||||||||||||||||| |||||||| |||| | || | | | ||| Sbjct 709 GCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGGGAGCGAGCGACCAAAG 768 Query 400 AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAG 459 ||| ||||||||||||||||||||||||||||||||||||| | | | ||||||| Sbjct 769 GAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGTGTACTTAG 828 Query 460 ACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||| |||||||||| Sbjct 829 ACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 872 >seq17168 Length=4014 Score = 167 bits (184), Expect = 7e-39 Identities = 139/168 (83%), Gaps = 9/168 (5%) Strand=Plus/Plus Query 345 CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTAT----CAAATA 400 ||||||||||||||||||||||||| |||||||| |||| | || | | |||| Sbjct 1454 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGGGAGCAAGTGACCAAAGG 1513 Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGA 460 ||| ||||||||||||||||||||||||||||||||||||| | | |||||||| Sbjct 1514 AACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCTGTCATGTGTACTTAGA 1573 Query 461 ----CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1574 CATGCATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 1620 >seq15440 Length=1812893 Score = 132 bits (146), Expect = 1e-28 Identities = 84/91 (92%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | |||||| ||||||| ||||||| |||||||||||||||||||||||||||| Sbjct 214955 TATTTTTCTTCACTAACTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCC 215014 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCT 133 ||||||||||||||| ||||||||||||||| Sbjct 215015 TTGGATGTGGTAGCCCTTTCTCAGGCTCCCT 215045 >seq7085 Length=2930454 Score = 120 bits (132), Expect = 9e-25 Identities = 127/162 (78%), Gaps = 13/162 (8%) Strand=Plus/Minus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA---AGGTACT----ATC 395 ||||| |||| | ||||||||||||| ||||| || |||| | ||| || | | Sbjct 1339696 AGCATATATTGGTTCTAGAATTACCA--GTTATACAAGTAGGAGGAAGGACCTCGCAACC 1339639 Query 396 AAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT-AGAT-TGCTTAT 453 ||| ||| |||||||||||||||| ||||| |||||||||||| || || | | Sbjct 1339638 AAAAGAACCATAACTGATTTAATGAATCATTCAGAGTTTCACTGTACCAGCCATG--TGT 1339581 Query 454 ACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGAC 495 ||||||||||| ||||||||||||||||||||||||||||| Sbjct 1339580 ACTTAGACATGACTGGCTTAATCTTTGAGACAAGCATATGAC 1339539 >seq25998 Length=1917 Score = 111 bits (122), Expect = 5e-22 Identities = 91/110 (83%), Gaps = 7/110 (6%) Strand=Plus/Plus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| ||| ||||||||||||||||||||||||||||||||||||| | | | || Sbjct 327 CAAAGGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGTGTA 386 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||| |||||||||||||||||||| |||||| ||| Sbjct 387 CTTAGACATGCAT------ATCTTTGAGACAAGCATATG-CTACTGACAG 429 >seq306 Length=3164110 Score = 102 bits (112), Expect = 2e-19 Identities = 128/172 (74%), Gaps = 13/172 (8%) Strand=Plus/Minus Query 338 TTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACT----A 393 || || | |||||||||||||||||||| || | | ||||| || | |||| || | Sbjct 1191272 TTATTGGAATGTATTAGCTCTAGAATTATCATGATGATCCAAGTTGGAAGGAGCTCATAA 1191213 Query 394 TCAAATAAACGATAACTGATTTAA---TGAGCCATTCGCAGTTTCACTGTATAGATTGCT 450 ||||| ||| ||||||||||||| | || |||| |||| |||| ||| | || Sbjct 1191212 TCAAAAGAACCATAACTGATTTAAAAGTAAGTCATTTGCAGCTTCATTGT----ACTGGC 1191157 Query 451 TATACTTAGACAT-GCATGGCTTAATCTTTGAGACAAGCATATG-ACTACTG 500 | || || |||| ||||| |||| |||||||||||||||||| | ||||| Sbjct 1191156 TGTATGTACACATCGCATGATTTAAGCTTTGAGACAAGCATATGTAATACTG 1191105 >seq15434 Length=459246 Score = 96.9 bits (106), Expect = 1e-17 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACCC--AAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||| |||||||||| |||| | || ||| ||||| | ||||||||| Sbjct 442770 ACTCATTCCAGTTACAAGACCTTGAAAAAAATTCTATATTGTTATTTTTCATCACTACCT 442711 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 | | || |||| | |||||| | ||||||||| |||| |||||||| |||| | Sbjct 442710 TCTCAGGTTGGGAGGTGATAATTTTTGTGCCTGCTGCTTTCCATGGATGTGATAGCTACT 442651 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCC 157 | ||||||||||||||| | || ||| | |||||| Sbjct 442650 TTTCAGGCTCCCTCTCCAAATTCAAACTGTGATTCCC 442614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509856648704