Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq15323 87.8 1e-12 seq571 87.8 1e-12 >seq15323 Length=1134477 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109 || ||||| || ||||| || |||| ||| || || ||||| |||| ||||| ||| Sbjct 892920 GTGTACTCTACTATTTCTGTACACAAATTGCTACATTTGATGGTCCCCAGGTTCTGCTGA 892861 Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169 || || || ||||| || || || || | ||||||||| || || ||||| ||| Sbjct 892860 TTGCTTTTCCGATTACAGCTGTCTTTATATAGCATGTACGGGGTCCCTGTCTCCGTCTGG 892801 Query 66170 GACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | ||| || Sbjct 892800 GACTCAATGATGGCATACCAGAG 892778 Score = 82.4 bits (90), Expect = 6e-11 Identities = 108/146 (74%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 66326 TGTTCT--ACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTG 66383 |||||| ||||| ||| || ||||| || ||||| ||||| |||| ||||| | | Sbjct 890661 TGTTCTCCACACGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCCCTGG 890602 Query 66384 CTCGTTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCA 66442 |||| ||||| || | || ||| || || || || ||||| ||||||||||| Sbjct 890601 CTCGCTGCTCTTCCTTCCCAGTG-TTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAG 890543 Query 66443 TGCCATGGTTCCAGGTAGATGGCGAA 66468 ||||| ||||||| ||||||||| || Sbjct 890542 TGCCACGGTTCCAAGTAGATGGCAAA 890517 >seq571 Length=175726 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 |||||||| | || || || | |||||||| ||||| |||| ||||||| |||||| Sbjct 164136 GAGAATCCCAGGCGCTTTGTCATCTTCCCCATTGAGTACCAGGACATTTGGCACATGTAT 164195 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || || || ||||||||||||||||| | |||||||| Sbjct 164196 AAGAAAGCAGAAGCTTCCTTCTGGACAGCTGAGGAGGT 164233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397393693019360