Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06- 17] 200,154 sequences; 1,995,607,322 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 3e-15 seq152282 93.3 3e-14 seq152438 89.7 4e-13 >seq1 Length=47594283 Score = 96.9 bits (106), Expect = 3e-15 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 61288 GAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTAC 61347 |||||||| |||||||| || ||||| ||||| ||||| ||| |||| |||||||||||| Sbjct 29604600 GAGGCGCGGTGTTTCTATGGTTTCCAAATTGCTATGGAAAATATCCATTCGGAGATGTAC 29604541 Query 61348 AGTGTTCTCATCGATACGTACAT 61370 ||| |||| || || |||||||| Sbjct 29604540 AGTCTTCTTATTGACACGTACAT 29604518 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 ||||||| || | | |||||||| ||||| || || | || || ||| ||||| | | Sbjct 29606530 ATGAACCTTTACTTAAGGAGAATCCGCGTCGCTTTGTCATTTTTCCTATCCAGTATCACG 29606471 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 |||| |||| ||||| ||||| || ||||||||||||||||| | |||||||| Sbjct 29606470 ATATCTGGCAGATGTATAAAAAAGCAGAAGCTTCCTTCTGGACCGCCGAGGAGGT 29606416 >seq152282 Length=256244 Score = 93.3 bits (102), Expect = 3e-14 Identities = 123/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 65696 TCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGT 65755 ||||||||||| | |||||||| || || || || ||||||| || ||||| || | Sbjct 180614 TCCTTGGCAAGGTCACAGCTGGCATCCAGGGCTCCATAATAAATCGTTTCGAAGATTTGC 180673 Query 65756 CGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACC-CATCAGGACAAAAGTGTC 65814 |||| ||| | ||||| |||||| | || ||||| |||||||| ||||| || Sbjct 180674 TGATTCAGTAACTGGGCCTCGGGGCTCTC-AAAGGGATACCTCATCAGGATAAAAGCATC 180732 Query 65815 GGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGA 65862 ||||| ||||| || || || || ||||| ||||| ||| ||||| Sbjct 180733 CGCCAGGCCTTGCACGCCGATTCCAATGGGGCGATGGCGCTTGTTGGA 180780 >seq152438 Length=1158950 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||||||| || |||||||||||||| | || || || || || || ||||| |||| Sbjct 117213 TGGAACGCTTTAGTCAGGAGGTGCAAGTTCCAGAAGCTCGCTGCTTTTATGGCTTTCAGA 117272 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || || |||||||| |||||||| ||||||||| | || || ||||| || |||| Sbjct 117273 TTCTTATCGAGAATGTTCACTCGGAAATGTACAGTTTGCTAATAGATACTTATATCA 117329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396598181814560