Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ornithorhynchus_20anatinus_20[refseq_20GCF_5F000002275.2_202011-06- 17] 200,154 sequences; 1,995,607,322 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq197203 98.7 4e-15 seq160084 91.5 6e-13 seq152550 86.0 3e-11 seq152520 86.0 3e-11 >seq197203 Length=4209 Score = 98.7 bits (108), Expect = 4e-15 Identities = 104/136 (76%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 349085 TCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAAG 349144 |||||||| | ||||| ||||||||| ||||||||||||| |||||||| ||||||| Sbjct 3552 TCCTTGAGGCGGGGCACGCCCAGGGTGACGTTCTTGGCCGACACGCCGGCGTAGTGGAAC 3493 Query 349145 GTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTACC 349204 || | || |||| ||| ||| ||||| || | ||||| | || ||| ||| ||| Sbjct 3492 GTATTCAGCGTCATCTGGGTGGCCGGCTCCCCCAGCGACTGGGCGGCCAGGGCGCCCACC 3433 Query 349205 ATCT-CGCCGGGCGCG 349219 |||| | ||||| ||| Sbjct 3432 ATCTCCCCCGGGTGCG 3417 >seq160084 Length=22186 Score = 91.5 bits (100), Expect = 6e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 351185 ACGCGGTGCACCATGATGGACCCGTTGTGGAGCGTGGGCTGGCGATTGTGGATGATGATG 351244 ||||| ||| |||| |||||| ||||| ||||| ||||| || ||| ||||| |||| Sbjct 16439 ACGCGATGCCCCATCATGGACATCTTGTGCAGCGTCGGCTGCCGGTTGAAGATGACGATG 16380 Query 351245 TCGCCATCGCGCAAGTGCCTCTCCACCT 351272 |||||||||| || |||||||||||||| Sbjct 16379 TCGCCATCGCACATGTGCCTCTCCACCT 16352 >seq152550 Length=9544914 Score = 86.0 bits (94), Expect = 3e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 349094 CTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAAGGTCTGGAGG 349153 ||||| || |||| ||| |||||| | | | |||||| ||||||||||| | |||| Sbjct 2805863 CTGGGGATCCCCAAGGTGACGTTCATCTCTCCTCTGCCGGCGAAGTGGAAGGTGTTGAGG 2805922 Query 349154 GTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTACCATCTCGCCG 349213 |||| ||| ||| ||| || ||||||| |||||| || || | ||| ||| ||| ||| Sbjct 2805923 GTCATCTGGGTGGAGGGTTCCCCGATGCTCTGGCCGGCTAGCAGGCCCACCGCCTCTCCG 2805982 Query 349214 GG 349215 || Sbjct 2805983 GG 2805984 >seq152520 Length=20599146 Score = 86.0 bits (94), Expect = 3e-11 Identities = 126/174 (72%), Gaps = 6/174 (3%) Strand=Plus/Minus Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046 ||||| || ||| || |||||| ||||||||| || | || ||||| | || |||||| Sbjct 17673687 CTCGATCAGCATCCCGATGGTCATTCGCGACGGGAAGCCGTGAGGGTTGAAGAGGATGTC 17673628 Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCAC--CAGGCCGTTG 449104 ||| || ||| | | |||| ||||||||||| | | |||| | ||| | Sbjct 17673627 CGGCATCATCCCGCTCTCCGTGAACGGCATGTCCTC--CGCCGGCCACAGCCGGCTCAGG 17673570 Query 449105 ACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTC-CCCCTGCTCGGGCTTGCG 449157 | ||| |||||||||||||||||| |||||||| || || ||||| ||||| Sbjct 17673569 ATGCCTTTCTGGCCGTGGCGGCTGGCAAACTTGTCTCCGATGGTCGGG-TTGCG 17673517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079262545820892