Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq264123 149 3e-33 seq188047 149 3e-33 seq74702 149 3e-33 seq158566 145 3e-32 seq90511 145 3e-32 seq200127 122 4e-25 seq82396 122 4e-25 seq24343 122 4e-25 seq167507 120 1e-24 seq266712 118 4e-24 seq41494 104 1e-19 seq256162 100 1e-18 seq261380 96.9 1e-17 seq267157 91.5 6e-16 seq251336 86.0 3e-14 seq159276 86.0 3e-14 seq264174 84.2 9e-14 seq261818 75.2 5e-11 seq94189 75.2 5e-11 >seq264123 Length=893400 Score = 149 bits (164), Expect = 3e-33 Identities = 105/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 108635 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 108576 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 108575 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 108516 >seq188047 Length=629 Score = 149 bits (164), Expect = 3e-33 Identities = 105/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 243 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 302 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 303 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 362 >seq74702 Length=729 Score = 149 bits (164), Expect = 3e-33 Identities = 105/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 152 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 211 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 212 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 271 >seq158566 Length=607 Score = 145 bits (160), Expect = 3e-32 Identities = 104/120 (87%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 65 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 124 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || | |||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 125 GTGGAGGTCCGTACCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 184 >seq90511 Length=358 Score = 145 bits (160), Expect = 3e-32 Identities = 104/120 (87%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct 170 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCTGGGCGAAGCCAGAGGAAACTCTG 229 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 230 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 289 >seq200127 Length=419 Score = 122 bits (134), Expect = 4e-25 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 178 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 119 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 118 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 59 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 58 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 19 >seq82396 Length=413 Score = 122 bits (134), Expect = 4e-25 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 161 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 102 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 101 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 42 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 41 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 2 >seq24343 Length=461 Score = 122 bits (134), Expect = 4e-25 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 322 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 263 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 262 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 203 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 202 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 163 >seq167507 Length=645 Score = 120 bits (132), Expect = 1e-24 Identities = 92/108 (85%), Gaps = 1/108 (1%) Strand=Plus/Minus Query 576 AAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGC 635 ||||||||||||||||||||| |||| ||||||||| ||| |||||||||||| || Sbjct 645 AAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAAGAA-CTCTGGTGGAGGTCCGT 587 Query 636 AGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 586 AGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 539 >seq266712 Length=380 Score = 118 bits (130), Expect = 4e-24 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||| ||||| | || ||| |||||| | | ||||| ||||||| Sbjct 29 GAGTCGGGTTGCTTGGGAAGGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 88 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 89 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 148 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 149 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 188 >seq41494 Length=377 Score = 104 bits (114), Expect = 1e-19 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | | ||| |||| | | | ||||| ||||||| Sbjct 155 GAGTCGGGTTGCTTGGGAATGCAGCCCAGAGCGGGTGGTACACTCCATCTAAGGCTAAAT 214 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || ||||| ||| ||| |||||| | Sbjct 215 ACCGGCACGAGACCGATAGTCAACAAGTACCGTATGGGAAAGTTGATAAGAACTTTGAAG 274 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 275 AGAGAGTTCAAGAGGGCGTGAAAACGTTAAGAGGTAAACG 314 >seq256162 Length=404384 Score = 100 bits (110), Expect = 1e-18 Identities = 94/119 (79%), Gaps = 2/119 (2%) Strand=Plus/Minus Query 564 TGTTG--GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTC 621 ||||| ||||| || ||||||||| ||||||||| |||||||||||||||||||||| Sbjct 319548 TGTTGTAGGACCTGACAGATGGTGAGCTATGCCTGGGCAGGGTGAAGCCAGAGGAAACTC 319489 Query 622 TGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680 ||||||||| | || ||| ||| || ||||| | ||| | | ||| |||||||| Sbjct 319488 TGGTGGAGGTCCATAGTGGTCCTGATGTACAAATTGGTCGAAAGACCTGGCTATAGGGG 319430 >seq261380 Length=897698 Score = 96.9 bits (106), Expect = 1e-17 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | |||| ||||||||||||| | || || | |||||| ||| ||||| ||||| | Sbjct 485628 GAGTTGGGTTGCTTGGGAATGCAGCCCAAAGTGTGTGGTAAACTTCCTCTAAGGCTAACT 485687 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || | |||||||||||| ||||||| | | ||||| ||||||| |||||| Sbjct 485688 ACTGCCAAGAGACCGATAGTCAACAAGTACCATAAGGGAAAGTTGAAAAGAACTTTGAGG 485747 Query 160 AGAGAGTT 167 ||||| || Sbjct 485748 AGAGAATT 485755 >seq267157 Length=339 Score = 91.5 bits (100), Expect = 6e-16 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 72 GGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAG 131 ||| |||||| | | ||||| |||||||| ||| ||||||||||| ||||||| | Sbjct 2 GGGTGGTAAACTCCATCTAAGGCTAAATACCGGCACGAGACCGATAGTCAACAAGTACCG 61 Query 132 TGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAA 191 | | ||||| ||||||| |||||| | |||||||| || || ||||||| ||| | | Sbjct 62 TAAGGGAAAGTTGAAAAGAACTTTGAAGAGAGAGTTCAAGAGGGCGTGAAACCGTTAAGA 121 Query 192 GGGAAGCG 199 || || || Sbjct 122 GGTAAACG 129 >seq251336 Length=114171 Score = 86.0 bits (94), Expect = 3e-14 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615 |||| | |||| ||||| | ||||||||||||| ||| || |||| ||||||||||| Sbjct 82118 AGCACACGTGTTAGGACCTGCAAGATGGTGAACTCTGCATGGGCAGGGCGAAGCCAGAGG 82177 Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675 |||| ||||||||| | ||| ||||||| || || || || ||| | ||||| | Sbjct 82178 AAACCGTGGTGGAGGTCCACAGTGGTTCTGAGATGAAAGTCAGTCATCAGACGTGGGTGT 82237 Query 676 AG 677 || Sbjct 82238 AG 82239 >seq159276 Length=550 Score = 86.0 bits (94), Expect = 3e-14 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 ||| |||||||||||||||||| || |||||| ||| ||||||||||| ||||| | Sbjct 1 CCACAGGAAACTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACC 60 Query 669 TGGGTATAGGGGCGA 683 ||||||||||||||| Sbjct 61 TGGGTATAGGGGCGA 75 >seq264174 Length=252593 Score = 84.2 bits (92), Expect = 9e-14 Identities = 104/143 (73%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | | || ||||||||||||| | || ||| |||||||| | ||||| ||||||| Sbjct 49460 GAGTTGGGCTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAATTCCATCTAAGGCTAAAT 49401 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| |||| ||||| ||||| | || ||| ||||||| |||||| | Sbjct 49400 ACCGGCACAAGACTGATAGTCAACAAGCACGGT------AAGTTGAAAAGAACTTTGAAC 49347 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || | ||||| Sbjct 49346 AGAGAGTTCAAGAGGGCATGAAA 49324 >seq261818 Length=964067 Score = 75.2 bits (82), Expect = 5e-11 Identities = 85/114 (75%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 || |||| | || |||||||||||||| ||| || | ||||||||||||||| |||| Sbjct 493370 TTAGGACACAAAGGATGGTGAACTATGGCTGGGCAGAGCAAAGCCAGAGGAAACTTTGGT 493429 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 ||||| | ||| || ||| | |||||| | || || | ||||| ||||| Sbjct 493430 GGAGGTCCATAGCAGTCCTGACATGCAAAGCTATTGTTTGACCTGGGTCTAGGG 493483 >seq94189 Length=2047 Score = 75.2 bits (82), Expect = 5e-11 Identities = 85/114 (75%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 || |||| | || |||||||||||||| ||| || | ||||||||||||||| |||| Sbjct 653 TTAGGACACAAAGGATGGTGAACTATGGCTGGGCAGAGCAAAGCCAGAGGAAACTTTGGT 594 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 ||||| | ||| || ||| | |||||| | || || | ||||| ||||| Sbjct 593 GGAGGTCCATAGCAGTCCTGACATGCAAAGCTATTGTTTGACCTGGGTCTAGGG 540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2074228148200