Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq28277 214 6e-53 seq35471 161 3e-37 seq33483 158 4e-36 seq6443 82.4 2e-13 seq40271 77.0 1e-11 seq12089 77.0 1e-11 >seq28277 Length=4399 Score = 214 bits (236), Expect = 6e-53 Identities = 140/154 (91%), Gaps = 3/154 (2%) Strand=Plus/Plus Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 ||||||||||||||||||||||||||| |||||||||||||||||||||| || |||| Sbjct 1 GACTAGAGTCAAGCTCAACAGGGTCTT---TCCCCGCTGATTCCGCCAAGCCTGTCCCCT 57 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398 |||||||||||| ||| |||||||| |||||||||||||||||||||| || ||||||| Sbjct 58 TGGCTGTGGTTTTGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATGCATTCATA 117 Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 | ||||||||||||||||||||||||||| ||| Sbjct 118 CATGTCACTAATTAGATGACGAGGCATTTGTCTA 151 >seq35471 Length=2545 Score = 161 bits (178), Expect = 3e-37 Identities = 97/102 (95%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 432 ACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACT 491 ||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||| Sbjct 2187 ACCTTAAGAGAGTCATAGTTACTCCTGCCATTTACCCGCGCTTCATTGAATTTCTTCACT 2246 Query 492 TTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||| ||||||||| Sbjct 2247 TTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 2288 >seq33483 Length=19622 Score = 158 bits (174), Expect = 4e-36 Identities = 154/197 (78%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 || ||| |||||||||||||| ||||| |||||| | | |||||||| || | ||| Sbjct 10472 CTTCCATATATTCTACACCTCTGAAGTCTCTTCACAGTGCCAGACTAGAGCCATGTCCAA 10531 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCC-GCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 |||| ||||||||| |||| || | |||| || | | |||||||||||| ||| Sbjct 10532 TAGGGCATTCTTTCCCTGCTGGTTTTTGACAAGTATGTACTCCTGGCTGTGGTTTTGCTG 10591 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 ||||||| ||||||||||||||||||| || | ||||||||| | |||||||| | | Sbjct 10592 GATAGTAAGTAGGGACAGTGGGAATCTCATTCACTCATTCATGCACATCACTAATGGGGT 10651 Query 416 GACGAGGCATTTGGCTA 432 || |||||||||||||| Sbjct 10652 GATGAGGCATTTGGCTA 10668 >seq6443 Length=45445 Score = 82.4 bits (90), Expect = 2e-13 Identities = 78/99 (79%), Gaps = 3/99 (3%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| ||||| ||||||| || | |||| | ||| ||||||||||||||| | Sbjct 7978 CTTCTGCTCCACAGG---TTTCTGTCCTTCCTGAGCTCACCTCAGGACACCTGCGTTAGG 7922 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 105 ||| |||| || ||| |||||| ||||||||||||| Sbjct 7921 TTTTGACAGCTGAGCCTCCCCAGTGGAACTCCCCACCTG 7883 >seq40271 Length=24936 Score = 77.0 bits (84), Expect = 1e-11 Identities = 66/82 (80%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | |||| |||| || |||| |||| | ||||||||||||||||||| | Sbjct 418 CTTCTGCTCCGCGGGAGGTTTCCGTCCTCCCTGAGCTCACCTTAGGACACCTGCGTTACG 477 Query 67 GTTTAACAGATGTGCCGCCCCA 88 ||| |||| ||| |||||||| Sbjct 478 CTTTGACAGGTGTACCGCCCCA 499 >seq12089 Length=660 Score = 77.0 bits (84), Expect = 1e-11 Identities = 48/52 (92%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 449 GTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500 |||||||||||||||||||| ||| | |||||||||||||||||||||||| Sbjct 609 GTTACTCCCGCCGTTTACCCTCGCATCATTGAATTTCTTCACTTTGACATTC 660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634319036000