Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq14405 96.9 3e-15 seq34970 93.3 3e-14 seq5984 87.8 1e-12 >seq14405 Length=70954 Score = 96.9 bits (106), Expect = 3e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| | | || || ||||||||||| ||||| |||||| ||| |||||| Sbjct 63414 CAGGAGGTGCAGATCCCAGAAGCTCGTTGTTTCTATGGCTTTCAGATTCTCATTGAGAAT 63355 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || ||||| ||||||||||| | ||||| || || ||||||| Sbjct 63354 GTTCACTCAGAGATGTACAGCTTGCTCATAGACACCTACATCA 63312 >seq34970 Length=16158 Score = 93.3 bits (102), Expect = 3e-14 Identities = 105/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| |||||||| || | ||||| || | |||| ||||| || | Sbjct 8630 CATGAAGAGATCAGGAATCCAGAGTGCAAAAAAGAGGTCTCTGGCTCTCTGCTCTTCCTT 8689 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || |||||| ||||||||||||||||| |||||||| ||||||| Sbjct 8690 CCCAGTG-TTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAGGTGCCATGGCTCCAGGT 8748 Query 66459 AGATGGCGAACGAGCCC 66475 ||||||| || ||||| Sbjct 8749 AGATGGCAAA--AGCCC 8763 >seq5984 Length=37620 Score = 87.8 bits (96), Expect = 1e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 61291 GCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGT 61350 || ||||||||||| |||||||||||||||||||| || | || || |||||||||||| Sbjct 869 GCTCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAACATACATTCAGAGATGTACAGT 928 Query 61351 GTTCTCATCGATACGTACATCAGGGA 61376 |||| || || || ||||| | ||| Sbjct 929 CTTCTTATTGACACCTACATTAAGGA 954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397306956230000