Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20aestiva_20[genbank_20GCA_5F001420675.1_202015-10-30] 3,232 sequences; 1,129,535,839 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq703 223 1e-55 seq2790 165 3e-38 seq2259 156 1e-35 seq1025 78.8 3e-12 >seq703 Length=1727845 Score = 223 bits (246), Expect = 1e-55 Identities = 227/299 (76%), Gaps = 32/299 (11%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||| | | ||| ||||||||| ||| |||||| | | | ||||||||||||||| Sbjct 357310 CTCCCATTCACTCTGCACCTCTCATGTCTCTTCACAGCGCCATAGTAGAGTCAAGCTCAA 357251 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||| |||||||||||| ||||||| |||||||| | |||||||||||||||||| || | Sbjct 357250 CAGAGTCTTCTTTCCCA-CTGATTCTGCCAAGCCTGCTCCCTTGGCTGTGGTTTCACTGG 357192 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGC--GTCACTAATTAGA 414 |||| ||||||||||||||| ||| | || || ||| | |||||| |||||| Sbjct 357191 ATAG-------GGACAGTGGGAATCTTGTTCACCCGTT--TGCNCATGTCACTGATTAGA 357141 Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||| |||||||||| ||||||||| | ||| ||| || ||| Sbjct 357140 TGATGAGGCATTTG--------------------GTTACTCCCACTGTTCACCTGCACTT 357101 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||| ||||||||||||| |||||||||||||||||| | |||| || Sbjct 357100 CATTGAATTTCTTCATTTTGACATTCAGACCACTGGGCAGAAATCACAACGTGTCAGCA 357042 >seq2790 Length=2529446 Score = 165 bits (182), Expect = 3e-38 Identities = 158/201 (79%), Gaps = 5/201 (2%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||| ||||| ||||||| |||||| ||| |||| | | || ||||||||||||||| Sbjct 232552 CTCTCACTTGTTCTACAACTCTCATGTCTCTTCATAGCACCAGATTAGAGTCAAGCTCAA 232493 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||| ||| | ||||||| ||| | || |||||| |||||||| ||| ||||| Sbjct 232492 CAGGGTCTTCTCTCCTCACTGATTCAGCCTAACCTGTTCCCCTGGCTGTGATTTTGCTAG 232433 Query 357 A----TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTC-ACTAATT 411 | |||| ||| |||||| ||||||| ||| ||||||||||| ||| | |||| Sbjct 232432 AGAGTNAGTACGTAGAGACAGTAGGAATCTTGTTCATCCATTCATGTATGTCGCCAAATT 232373 Query 412 AGATGACGAGGCATTTGGCTA 432 ||||||| |||| |||| ||| Sbjct 232372 AGATGACAAGGCTTTTGACTA 232352 >seq2259 Length=1152113 Score = 156 bits (172), Expect = 1e-35 Identities = 138/169 (82%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATT-CCGCCAAGCCCGTTCCC 337 ||||| |||||||| ||| |||||| ||||||| |||||| || |||||||| || | Sbjct 206212 GACTACAGTCAAGCACAATAGGGTC--CTTTCCCA-CTGATTTCCACCAAGCCCCTTTTC 206156 Query 338 TTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 397 |||||||| | ||| || | |||||| |||||||||| | ||||| ||| |||||||| | Sbjct 206155 TTGGCTGTTGCTTCACTGGCTAGTAGGTAGGGACAGTAGCAATCTTGTTTATCCATTCCT 206096 Query 398 GCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCA 446 || || |||||||||||| |||| | |||||||||||| |||||||| Sbjct 206095 GCATCTCGCTAATTAGATGATGAGGTACTTGGCTACCTTACGAGAGTCA 206047 >seq1025 Length=1554379 Score = 78.8 bits (86), Expect = 3e-12 Identities = 61/73 (84%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||||||| |||||||| ||| |||||| | |||||||||| ||||||| Sbjct 709070 CTCCCACTTATTCTATACCTCTCATGTCTCTTCACAGCACCAGACTAGAGTCTAGCTCAA 709129 Query 297 CAGGGTCTTCTTT 309 ||| || |||||| Sbjct 709130 CAGAGTTTTCTTT 709142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635147150336