Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20vittata_20[genbank_20GCA_5F000332375.1_202013-01-22] 182,974 sequences; 1,175,404,042 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq156987 358 2e-96 seq95945 221 4e-55 seq57534 165 3e-38 seq65521 156 1e-35 seq150563 93.3 1e-16 >seq156987 Length=4995 Score = 358 bits (396), Expect = 2e-96 Identities = 207/213 (97%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4994 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 4935 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398 |||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||| Sbjct 4934 TGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATG 4875 Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCG 458 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4874 CGCATCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCG 4815 Query 459 CCGTTTACCCGCGCTTGGTTGAATTTCTTCACT 491 |||||||||||||||| ||||||||||||||| Sbjct 4814 CCGTTTACCCGCGCTTCATTGAATTTCTTCACT 4782 >seq95945 Length=1289 Score = 221 bits (244), Expect = 4e-55 Identities = 227/299 (76%), Gaps = 32/299 (11%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||| | | || ||||||||| ||| |||||| | | | ||||||||||||||| Sbjct 687 CTCCCATTCACTCCGCACCTCTCATGTCTCTTCACAGCGCCATAGTAGAGTCAAGCTCAA 746 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||| |||||||||||| ||||||| |||||||| | |||||||||||||||||| || | Sbjct 747 CAGAGTCTTCTTTCCCA-CTGATTCTGCCAAGCCTGCTCCCTTGGCTGTGGTTTCACTGG 805 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGC--GTCACTAATTAGA 414 ||| |||||||||||||||| ||| | || || ||||| |||||| |||||| Sbjct 806 ATA-------GGGACAGTGGGAATCTTGTTCACCCCTT--TGCGCATGTCACTGATTAGA 856 Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||| |||||||||| ||||||||| | ||| ||| || ||| Sbjct 857 TGATGAGGCATTTG--------------------GTTACTCCCACTGTTCACCTGCACTT 896 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||| ||||||||||||| |||||||||||||||||| | |||| || Sbjct 897 CATTGAATTTCTTCATTTTGACATTCAGACCACTGGGCAGAAATCACAACGTGTCAGCA 955 >seq57534 Length=14839 Score = 165 bits (182), Expect = 3e-38 Identities = 158/201 (79%), Gaps = 5/201 (2%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||| ||||| ||||||| |||||| ||| |||| | | || ||||||||||||||| Sbjct 11623 CTCTCACTTGTTCTACAACTCTCATGTCTCTTCATAGCACCAGATTAGAGTCAAGCTCAA 11564 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 || |||||||| ||| | ||||||| ||| | || |||||| |||||||| ||| ||||| Sbjct 11563 CACGGTCTTCTCTCCTCACTGATTCAGCCTAACCTGTTCCCCTGGCTGTGATTTTGCTAG 11504 Query 357 A----TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA-CTAATT 411 | |||| ||| |||||| ||||||| ||| ||||||||||| |||| | |||| Sbjct 11503 AGAGTAAGTACGTAGAGACAGTAGGAATCTTGTTCATCCATTCATGTATGTCACCAAATT 11444 Query 412 AGATGACGAGGCATTTGGCTA 432 ||||||| |||| |||| ||| Sbjct 11443 AGATGACAAGGCTTTTGACTA 11423 >seq65521 Length=64406 Score = 156 bits (172), Expect = 1e-35 Identities = 138/169 (82%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATT-CCGCCAAGCCCGTTCCC 337 ||||| |||||||| ||| |||||| ||||||| |||||| || |||||||| || | Sbjct 3195 GACTACAGTCAAGCACAATAGGGTC--CTTTCCCA-CTGATTTCCACCAAGCCCCTTTTC 3139 Query 338 TTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 397 |||||||| | ||| || | |||||| |||||||||| | ||||| ||| |||||||| | Sbjct 3138 TTGGCTGTTGCTTCACTGGCTAGTAGGTAGGGACAGTAGCAATCTTGTTTATCCATTCCT 3079 Query 398 GCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCA 446 || || |||||||||||| |||| | |||||||||||| |||||||| Sbjct 3078 GCATCTCGCTAATTAGATGATGAGGTACTTGGCTACCTTACGAGAGTCA 3030 >seq150563 Length=447 Score = 93.3 bits (102), Expect = 1e-16 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| |||||| |||||| |||| || |||| |||| | || |||||||||||||||| | Sbjct 273 CTTCTGCTCTGCAGGAGGTTTCCGTCCTCCCTGAGCTCGCCATAGGACACCTGCGTTACG 214 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 105 || |||| ||| ||||||||| ||||||| |||||| Sbjct 213 CATTGACAGGTGTACCGCCCCAGTCAAACTCTGCACCTG 175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1632208009152