Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20vittata_20[genbank_20GCA_5F000332375.1_202013-01-22] 182,974 sequences; 1,175,404,042 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq88221 111 1e-19 seq56122 95.1 1e-14 seq77566 91.5 1e-13 seq26289 91.5 1e-13 seq2364 89.7 4e-13 >seq88221 Length=1045 Score = 111 bits (122), Expect = 1e-19 Identities = 124/162 (77%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| || ||||| || ||||| |||||||||| ||||| || Sbjct 722 GGTATACTCCACGATTTCTGTACACAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTG 781 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| | ||||| | || ||||| | |||||| || |||||||||||| || Sbjct 782 GTTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTAGGGTGTGCCGGTCTCAGTCTG 841 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208 ||||| ||||||| || || ||||| || | ||||||||| Sbjct 842 TGACTCGATGATGGAGTACC--AGAGCTGCTGGGCCTTCACC 881 >seq56122 Length=31370 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||| |||||| ||||||||||| | | || || ||||||||||| ||||| |||| Sbjct 19372 TGGCACGTTTTAGTCAGGAGGTGCAGATCCCAGAAGCCCGTTGTTTCTATGGCTTTCAGA 19431 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || ||| ||||| || ||||| ||||||||||| | ||||| || || ||||||| Sbjct 19432 TTCTCATTGAGAACGTTCACTCAGAGATGTACAGCTTGCTCATAGACACCTACATCA 19488 >seq77566 Length=1787 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| || || |||||||| | || || || |||||||| |||||||||| Sbjct 1535 TGGAGCGGTTCAGTCAAGAAGTGCAAGTCACAGAAGCTCGCTGTTTCTATGGCTTCCAGA 1476 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 |||||||||| || | || || || ||||||||| |||| || || || ||||| Sbjct 1475 TTGCCATGGAAAACATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACAT 1421 >seq26289 Length=38760 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| || || |||||||| | || || || |||||||| |||||||||| Sbjct 134 TGGAGCGGTTCAGTCAAGAAGTGCAAGTCACAGAAGCTCGCTGTTTCTATGGCTTCCAGA 75 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 |||||||||| || | || || || ||||||||| |||| || || || ||||| Sbjct 74 TTGCCATGGAAAACATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACAT 20 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 || || || || || ||||| | ||||||||| |||| | |||||||||| |||||| Sbjct 1405 GACAACCCCCGCCGCTTCGTCATATTCCCCATCCAGTACCACGATATTTGGCAGATGTAC 1346 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || ||||| || || ||||||||||||| ||||||||| Sbjct 1345 AAGAAGGCTGAGGCCTCCTTCTGGACGGCGGAGGAGGT 1308 >seq2364 Length=7247 Score = 89.7 bits (98), Expect = 4e-13 Identities = 104/137 (76%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| ||||| || || |||| || || | ||||||||||| || | Sbjct 5904 CATGAAGAGATCAGGAATCCAAAGTGCAAAGAAAAGGTCTCTGGCTCGTTGCTCTTCTTT 5845 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || |||||| || || ||||||||||| |||||| || ||||||| Sbjct 5844 CCCAGTG-TTCTTCTTCAAGTCCAGAAATTCAAAGATGTCCAAATGCCAGGGCTCCAGGT 5786 Query 66459 AGATGGCGAACGAGCCC 66475 ||||||| || ||||| Sbjct 5785 AGATGGCAAA--AGCCC 5771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396681425099360