Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq352 190 4e-46 seq34149 111 3e-22 seq51459 78.8 2e-12 >seq352 Length=3900964 Score = 190 bits (210), Expect = 4e-46 Identities = 211/276 (76%), Gaps = 4/276 (1%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| | || |||| ||| || ||| | | | |||||||||||||||||||||||| Sbjct 1505682 ATGCTCTTAAGTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 1505623 Query 98 TCAAAGCAGGCCTTT-GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT 156 |||||||||||| || |||||| ||| |||||||| ||||||||| | ||||| Sbjct 1505622 TCAAAGCAGGCCGGCCGCCGGAATACTGCAGCTAGGAATAATGGAATAGGAC-TCCGGTT 1505564 Query 157 CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 ||||||||||||||| | | || | |||||||| ||||| | |||||| | || Sbjct 1505563 CTATTTTGTTGGTTTTCGGAAACGGGGCCATGATTAAGAGGGACGGCCGGGGGCATTCGT 1505504 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| | |||||||||||||||||| ||||| ||||| |||||||| || Sbjct 1505503 ATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGAACTAAAGCGAAAGCATT 1505444 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 ||||| |||||||||||||||| |||||||||| Sbjct 1505443 TGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 1505409 >seq34149 Length=131 Score = 111 bits (122), Expect = 3e-22 Identities = 103/128 (80%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 83 AAAAAATTAGAGTGTTCAAAGCAGGCC-TTTGCTCGAATACATTAGCATGGAATAATAGA 141 ||||||||||||||||||||||||||| |||| |||||| ||| |||||||| || Sbjct 1 AAAAAATTAGAGTGTTCAAAGCAGGCCGGCTGCTGGAATACTGCAGCTAGGAATAATGGA 60 Query 142 ATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATA 201 ||||||| | |||||||||||||||||||| | | || | |||||||| ||||| Sbjct 61 ATAGGAC-TCCGGTTCTATTTTGTTGGTTTTCGGAAACGGGGCCATGATTAAGAGGGACG 119 Query 202 GTCGGGGG 209 | |||||| Sbjct 120 GCCGGGGG 127 >seq51459 Length=211 Score = 78.8 bits (86), Expect = 2e-12 Identities = 69/85 (81%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 228 AGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATG 287 |||||||||||||||||| ||||| ||||| |||||||| || ||||| ||| Sbjct 174 AGAGGTGAAATTCTTGGACCGGCGCAAGACGAACTAAAGCGAAAGCATTTGCCAAGAATG 115 Query 288 TTTTCATTAATCAGTGAACGAAAGT 312 ||||||||||||| |||||||||| Sbjct 114 TTTTCATTAATCA-AGAACGAAAGT 91 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914481677824