Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq521 136 2e-29 seq1187 129 2e-27 seq404 96.9 1e-17 seq16376 84.2 9e-14 >seq521 Length=23033 Score = 136 bits (150), Expect = 2e-29 Identities = 99/115 (86%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 15181 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 15122 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || |||||| ||| ||||||||||| ||||| | |||| ||||||||| Sbjct 15121 GGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCCGGGTCTAGGGGCGA 15067 >seq1187 Length=503322 Score = 129 bits (142), Expect = 2e-27 Identities = 99/116 (85%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATG-CCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGG 627 |||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||| Sbjct 399353 GGACCCGAAAGATGGTGAACTATGGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGG 399412 Query 628 AGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| || |||||| ||| ||||||||||| ||||| | |||| ||||||||| Sbjct 399413 AGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCCGGGTCTAGGGGCGA 399468 >seq404 Length=1135484 Score = 96.9 bits (106), Expect = 1e-17 Identities = 92/115 (80%), Gaps = 6/115 (5%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 ||||| |||||| ||||||||||||||| |||| |||||||| ||||||||||||| Sbjct 383751 GGACCTGAAAGACGGTGAACTATGCCTGGGCAGGGCAAAGCCAGA-CAAACTCTGGTGGA 383809 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || ||| |||||| | |||||| | ||||| | |||||| |||||||| Sbjct 383810 GGTACGTAGCAGTTCTGACATGCAAAGC---CGTCAGA--TGGGTACAGGGGCGA 383859 >seq16376 Length=102 Score = 84.2 bits (92), Expect = 9e-14 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 98 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 39 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTA 128 | ||| |||||||||||| ||||||| Sbjct 38 ACGGGCACGAGACCGATAGCCAACAAGTA 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078316432400