Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq270 324 2e-86 seq716 264 2e-68 seq1319 206 5e-51 seq452 156 7e-36 seq258 154 3e-35 seq115 154 3e-35 seq264 152 9e-35 seq213 152 9e-35 seq1139 147 4e-33 seq970 113 8e-23 seq133 89.7 9e-16 seq550 75.2 2e-11 >seq270 Length=2125295 Score = 324 bits (358), Expect = 2e-86 Identities = 194/204 (95%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1231639 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 1231580 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 1231579 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 1231520 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 1231519 CATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 1231460 Query 211 CTGTGGTAACTTTTCTGGCACCTC 234 ||||||||||||||||| |||||| Sbjct 1231459 CTGTGGTAACTTTTCTGACACCTC 1231436 >seq716 Length=1270052 Score = 264 bits (292), Expect = 2e-68 Identities = 202/239 (85%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 55 GTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCT 114 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 580150 GTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCT 580091 Query 115 TACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGT 174 | |||||||||||| ||||||| |||||||||||| ||||||||||||||| | || Sbjct 580090 TGGTGAATTCTGCTTCACAATGATAGAAAGAGCCGACATTGAAGGATCAAAAAGCGATGT 580031 Query 175 CGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 | |||||||| |||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 580030 CACTATGAACATGTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTC 579971 Query 235 TAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 || | ||| | | | |||||||| ||||| | |||||| ||| ||||||| Sbjct 579970 CTGCTTAAAACCCAAAAAGCCAGAAGGATCGCGAGGCCCCGCTTTCACGGTCTGTATTC 579912 >seq1319 Length=1706257 Score = 206 bits (228), Expect = 5e-51 Identities = 138/154 (90%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||| Sbjct 1337806 TCATCAGTAGGGTAAAATTAACCTGTCTCACGACGGTCTAATCCCAGCTCACGTTCCCTA 1337865 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||| |||||||||||||||| |||||||||||| |||||||||||||| | Sbjct 1337866 TTAGTGGGAGAACAATCCAACGCTTGGTGAATTCTGCTTCACAGTGATAGGAAGAGCCTA 1337925 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAAC 184 ||| | ||||||||||||| |||| ||||||||| Sbjct 1337926 CATTGTAGGATCAAAAAGCGACGTTGCTATGAAC 1337959 >seq452 Length=5998093 Score = 156 bits (172), Expect = 7e-36 Identities = 101/111 (91%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||| Sbjct 4283303 TCATCAGTAGGGTAAAAATGACCTGTCTCATGACACTCTAAACCCAGCTCACGTTCCCTA 4283362 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGG 141 ||||||||||||||||||||||||| |||||||||||| |||||||| Sbjct 4283363 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGG 4283413 >seq258 Length=1263724 Score = 154 bits (170), Expect = 3e-35 Identities = 103/115 (90%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||| Sbjct 1233197 TCATCAGTAGGGTAAAAATGACCTGTCTCATGACACTCTAAACCCAGCTCACGTTCCCTA 1233256 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGA 145 |||||||||||| ||||||| |||| |||||||||||| |||||||||||| Sbjct 1233257 TTAGTGGGTGAAAAATCCAATGCTTGATGAATTCTGCTTCACAATGATAGGAAGA 1233311 >seq115 Length=1371145 Score = 154 bits (170), Expect = 3e-35 Identities = 91/95 (96%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 145497 TCATCAGTAGGGTAAAACTAACCTGTCTCATGATGGTCTAAACCCAGCTCACGTTCCCTA 145556 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCT 125 ||||||||||||||||||||||||| ||||||| Sbjct 145557 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCT 145591 >seq264 Length=1020552 Score = 152 bits (168), Expect = 9e-35 Identities = 127/154 (82%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 || |||||||||||||||| |||| |||||||||||| |||||||||||||| ||| Sbjct 850718 TAATGGGTGAACAATCCAATGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCTGAC 850777 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 || ||| | ||| || | |||||| |||||| |||| || | ||||||||||||||||| Sbjct 850778 ATGGAAAGGTCACAATGTGACGTCGTTATGAATGCTTTGCCGTCACAAGCCAGTTATCCC 850837 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAAT 245 ||||||||| |||||| |||||| || | |||| Sbjct 850838 TGTGGTAAC-TTTCTGACACCTCCTGCTTAAAAT 850870 >seq213 Length=2743468 Score = 152 bits (168), Expect = 9e-35 Identities = 117/138 (85%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||| |||||||||||||||||||||||||||| ||||| ||||| ||||||| || Sbjct 2016845 TCATCAGCAGGGTAAAACTAACCTGTCTCATGACGGCATAAACACAGCTGACGTTCCTTA 2016786 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||||||| ||||||| |||| ||||| |||| |||||||||||||| | Sbjct 2016785 TTAGTGGGTGAAAAATCCAAAGCTTGTTGAATT---CTTCACAGTGATAGGAAGAGCCAA 2016729 Query 151 CATCGAAGGATCAAAAAG 168 ||| |||| ||||||||| Sbjct 2016728 CATTGAAGCATCAAAAAG 2016711 >seq1139 Length=2489873 Score = 147 bits (162), Expect = 4e-33 Identities = 132/163 (81%), Gaps = 6/163 (4%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||| | |||||| | |||||| |||||| |||||||| | Sbjct 1408536 TCATCAGTAGGGTAAAACTACCTTGTCTCCCATCAGTCTAATCCCAGC--ACGTTCCCCA 1408593 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTG--CTTCGGTATGATAGGAAGAGCC 148 |||||||||||| |||||||||||| |||| ||| || | ||| || ||||| | Sbjct 1408594 TTAGTGGGTGAATAATCCAACGCTTGGTGAATCCTGTCCTAC--AATGGAAGTAAGAGAC 1408651 Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGC 191 ||||| ||||||||||||||||| ||| |||| ||| |||||| Sbjct 1408652 GACATTGAAGGATCAAAAAGCAATGTCACTATAAACCCTTGGC 1408694 >seq970 Length=2318530 Score = 113 bits (124), Expect = 8e-23 Identities = 188/265 (71%), Gaps = 10/265 (4%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||||||| | | |||| ||| ||||||| | | ||||||||||||||||||||| | Sbjct 568254 GTCATCAGGAAGATAAACGTAATGTGTCTCACGGCAGTCTAAACCCAGCTCACGTTCATT 568313 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGT-ATGATAGGAAGAGCC 148 |||| |||||||| ||| | || | || ||||| ||| || ||| | ||| | | Sbjct 568314 GTTAGAGGGTGAACTGCCCAGCACTCAGTGACTTCTG-TTCTGTGGTGACACGAAAATCT 568372 Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTAT 208 |||||| ||||| ||| || | ||| ||| |||| ||||| || | || || | Sbjct 568373 GACATCCAAGGACTGAAA--TAAGTTTGCT---AACACTTGACTGCCTCAGGGCA-TTTT 568426 Query 209 CCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATA 268 | ||||||||||||||||| || | || || | ||| | || || | ||| | | Sbjct 568427 CTCTGTGGTAACTTTTCTGACATCACTTGCTTAAAACCTAGACGGTCAGAAG--ACCTGA 568484 Query 269 GGCCACACTTTCATGGTTTGTATTC 293 ||||| || |||||| ||||||| Sbjct 568485 GGCCATGCTAGCATGGTCTGTATTC 568509 >seq133 Length=215407 Score = 89.7 bits (98), Expect = 9e-16 Identities = 141/200 (71%), Gaps = 9/200 (5%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||| || ||||||| |||||| | ||||||| || ||||| | |||| | | Sbjct 139507 CATCAGTAGGGAAACACTAACCAGTCTCACTATGGTCTAATCCTAGCTCCCATTCCTTGT 139566 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 || ||||||||||||||||| | | | |||| ||| || || || | || | Sbjct 139567 TATTGGGTGAACAATCCAAC---TGGCAAGTTCTACTTTACAATAAT--GAGAAACCAAT 139621 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 |||| |||||||| || | || || | ||||| | ||||||| || ||| | Sbjct 139622 GCTGAAGTATCAAAAATCAGCATCACTTT----GCTTGTCCACCACAAGACAAATATTTC 139677 Query 212 TGTGGTAACTTTTCTGGCAC 231 |||| |||||| || ||| Sbjct 139678 CATGGTCACTTTTATGACAC 139697 >seq550 Length=4102838 Score = 75.2 bits (82), Expect = 2e-11 Identities = 56/66 (85%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||| ||||||||||||| ||| |||||| ||||| | ||| ||| Sbjct 501712 TCATCAGTAGGGTAAAACGAACCTGTCTCATGTCGGACTAAACACAGCTGTCATTCTCTA 501771 Query 91 TTAGTG 96 || || Sbjct 501772 CTACTG 501777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853729398528