Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq352 95.1 1e-17 seq34149 75.2 1e-11 >seq352 Length=3900964 Score = 95.1 bits (104), Expect = 1e-17 Identities = 143/193 (74%), Gaps = 8/193 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| ||| |||||| |||| Sbjct 1505549 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGCAGTATTCCGGCG 1505607 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG-TCCTGGTTCCTCCGCACA 127 | ||||||||||||||||||||||| |||| ||||| | | | || || | | ||| Sbjct 1505608 GCCGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGGCCCCGCGGGACA 1505667 Query 128 C-CAATGAAG-GCAT-ACGGGCTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCGC 182 | || | ||| |||| ||| | || | ||| | ||||||| | || ||| ||||| Sbjct 1505668 CTCACTTAAGAGCATCGAGGGGGCGCCGACAGGCAGGGGCTGGCACAGGCGGTAGCTCGC 1505727 Query 183 CGTGAGGCGGACC 195 | | |||||||| Sbjct 1505728 CTCGCGGCGGACC 1505740 >seq34149 Length=131 Score = 75.2 bits (82), Expect = 1e-11 Identities = 71/88 (81%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGC- 68 ||||||||||||||| || | ||||||||| |||||||| ||| |||||| || Sbjct 89 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGCAGTATTCCAGCA 31 Query 69 GTAAGCCTGCTTTGAACACTCTAATTTT 96 | |||||||||||||||||||||||| Sbjct 30 GCCGGCCTGCTTTGAACACTCTAATTTT 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594747438192