Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq352 100 3e-19 seq34149 87.8 2e-15 >seq352 Length=3900964 Score = 100 bits (110), Expect = 3e-19 Identities = 129/174 (74%), Gaps = 3/174 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC-TTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| |||||||||||||| || |||||| | | || Sbjct 1505646 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGGCCGCCGGAATACTGCAGCTAGG 1505587 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | |||||||||||||| ||||| | ||| | ||||| Sbjct 1505586 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAAACGGGGCCATGATT 1505529 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 1505528 AAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 1505475 >seq34149 Length=131 Score = 87.8 bits (96), Expect = 2e-15 Identities = 75/90 (83%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 22 AAAAAATTAGAGCGTTCAAAGCAGGCC-TTTGCTCGAATACATTACCATGGAATAATAGA 80 |||||||||||| |||||||||||||| |||| |||||| | | |||||||| || Sbjct 1 AAAAAATTAGAGTGTTCAAAGCAGGCCGGCTGCTGGAATACTGCAGCTAGGAATAATGGA 60 Query 81 ATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 ||||||| | |||||||||||||| ||||| Sbjct 61 ATAGGAC-TCCGGTTCTATTTTGTTGGTTT 89 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511610699520