Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq716 277 6e-72 seq26999 168 2e-39 seq14669 158 4e-36 seq30459 111 5e-22 seq337 104 8e-20 >seq716 Length=1270052 Score = 277 bits (306), Expect = 6e-72 Identities = 366/507 (72%), Gaps = 43/507 (8%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || ||| |||||| |||| |||| | ||||||||||||| | ||| | Sbjct 579878 CTTCTGCTCCACGAGAGGTTTCTGGCCTCCCTGAGCTCACCTTAGGACACCTACATTAGG 579819 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||| ||| || |||||| |||||||||||| ||| |||| | ||| | Sbjct 579818 CTTTGACAGGTGTACCACCCCAGTCAAACTCCCCACATGATGCTGTCCCCGGAGCGGGTT 579759 Query 127 G-GCCCGCGAAG-----GAC-CTTAACGCCAGAAAATGG------TCGGTGAAGACCAGT 173 | ||||| | | ||| ||| |||||||| | |||| | ||| Sbjct 579758 GTGCCCGACACGTGCTGGACACTTGGCGCCAGAAGCGAGAGCCCCTCGGGGCTCACCCCC 579699 Query 174 TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGC-GCCGAA 232 || ||| | ||||| |||| ||||| || ||||||||||||||| | |||| | Sbjct 579698 -CCACTTTACCAGGTAAGTGAAAACACGATCAGAGTAGTGGTATTTCACCGCCAGCCGGA 579640 Query 233 ACGGC-------------------------TCCCACTTATTCTACACCTCTCAAGTCATT 267 | || |||||||| | |||||| ||||| || | Sbjct 579639 GCCGCGCTGCAGTCATGTGACCACAGAGCCTCCCACTTGTCCTACACATCTCATGTTTCT 579580 Query 268 TCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAA 327 | |||| | |||||||| ||| ||||||||||| |||||||||| |||||| ||||| Sbjct 579579 TTACAACACCAGACTAGAGACAAACTCAACAGGGTGTTCTTTCCCCATTGATTCTGCCAA 579520 Query 328 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTA 387 |||| |||||||||||||||||| ||| || |||| |||||||||||||||||| ||| Sbjct 579519 GCCCATTCCCTTGGCTGTGGTTTTGCTGGACGGTAGGTAGGGACAGTGGGAATCTTGTTC 579460 Query 388 ATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCAT 447 |||||||||||| |||||||||||||||||||||||||||||||| | ||||||||| Sbjct 579459 ATCCATTCATGCACGTCACTAATTAGATGACGAGGCATTTGGCTATATGAAGAGAGTC-- 579402 Query 448 AGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||||||| | |||| | |||| Sbjct 579401 AGTTACTCCCGCC-TATACCGGTGCTT 579376 >seq26999 Length=117 Score = 168 bits (186), Expect = 2e-39 Identities = 98/101 (97%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTT 60 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||| ||||||||| Sbjct 61 TGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 101 >seq14669 Length=100 Score = 158 bits (174), Expect = 4e-36 Identities = 95/100 (95%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 333 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCA 392 |||||||||||||||||||||| || |||| |||||||||||||||||||||| ||||| Sbjct 100 TTCCCTTGGCTGTGGTTTCGCTGGACGGTAGGTAGGGACAGTGGGAATCTCGTTCATCCA 41 Query 393 TTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 |||||||||||||||||||||||||||||||||||||||| Sbjct 40 TTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 1 >seq30459 Length=124 Score = 111 bits (122), Expect = 5e-22 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||| |||||||||||| ||| |||||| | | |||||||||||||||||| Sbjct 84 CTCCCACTTATCCTACACCTCTCATGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAA 25 Query 297 CAGGGTCTTCTTTCCCCGCTGATT 320 ||||||| |||||||||||||||| Sbjct 24 CAGGGTCGTCTTTCCCCGCTGATT 1 >seq337 Length=426966 Score = 104 bits (114), Expect = 8e-20 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| |||||| |||| |||| | ||||||||||||||||||| | Sbjct 22883 CTTCTGCTCCACGGGAGGTTTCTGGCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 22824 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||| ||| |||||||| |||||||||| |||||| |||| Sbjct 22823 CTTTGACAGGTGTATCGCCCCAGTCAAACTCCCCGCCTGACGCTGTC 22777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1633916564224