Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq352 459 8e-127 seq65528 158 4e-36 seq1696 129 2e-27 seq52249 107 6e-21 >seq352 Length=3900964 Score = 459 bits (508), Expect = 8e-127 Identities = 417/516 (81%), Gaps = 16/516 (3%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 1505878 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 1505937 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1505938 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 1505997 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||| Sbjct 1505998 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTGGTCACCATGGTAG 1506057 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || | |||||||||||||||||||||||||| ||| ||||| | |||||| | | Sbjct 1506058 GCACAGACACTACCATCGAAAGTTGATAGGGCAGACATTCGAATGGGTCGTCGCCGCCGC 1506117 Query 242 AAGGCCATGCGATTCGTT--AAGTTATTATGAATCACCAAGGAGCCCCGAAGGGC----G 295 || | |||||| | | | ||||| || ||||||| | || | | || | Sbjct 1506118 GGGGGCGTGCGATCGGCTCGAGGTTATCTAGAGTCACCAAAGCCGCCGGGCGAGCCCGGG 1506177 Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGG-GGTTTTTAGCATGTATT 352 |||| |||| ||| |||||| ||| | | || || ||||| | | | ||||||||| Sbjct 1506178 TTGG-TTTTGGTCTGATAAATGCACGCGTCCCCGGAGGTCGGCGCTCGTCGGCATGTATT 1506236 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTA---GTAAGGTA-CTATCAAATAAACGATAA 408 ||||||||||||||||| |||||||| | | | | || | | | |||| ||| |||| Sbjct 1506237 AGCTCTAGAATTACCACAGTTATCCAAGGAGCGGGAGGGGAGCGACCAAAGGAACCATAA 1506296 Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATG 468 ||||||||||||||||||||||||||||||||| | | | ||||| ||||||||| Sbjct 1506297 CTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGCCCGTGTGCACTTACACATGCATG 1506356 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||| |||||||||| Sbjct 1506357 GCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 1506391 >seq65528 Length=446 Score = 158 bits (174), Expect = 4e-36 Identities = 131/157 (83%), Gaps = 5/157 (3%) Strand=Plus/Minus Query 352 TAGCTCTAGAATTACCACGGTTATCCATGTAGT---AAGGTA-CTATCAAATAAACGATA 407 |||||||||||||||||| |||||||| | || | || | | | |||| ||| ||| Sbjct 446 TAGCTCTAGAATTACCACAGTTATCCAAGGAGCGGGAGGGGAGCGACCAAAGGAACCATA 387 Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCAT 467 |||||||||||||||||||||||||||||||||| | | | ||||| |||||||| Sbjct 386 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGCCCGTGTGCACTTACACATGCAT 327 Query 468 GGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||| |||||||||| Sbjct 326 GGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 291 >seq1696 Length=1014780 Score = 129 bits (142), Expect = 2e-27 Identities = 119/148 (80%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 8 TTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTAT-TGTCACTACCTCCCCG 65 ||||||||||||| || |||||||| ||||||| ||||| | |||||||||||||| Sbjct 583159 TTCCAATTACAAGGCCTCAAAAGAGTCCTGTATTGTTATTTTTCTGTCACTACCTCCCTA 583100 Query 66 TGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCA 125 ||| ||| | ||||| ||| ||||||||||||||||||||| ||||||| ||| Sbjct 583099 GGTCAGGAGTAGGTAACCTGCACGCCTGCTGCCTTCCTTGGATCTGGTAGCATCCCTTCA 583040 Query 126 GGCTCCCTCTCCGGAATCGAACCCTAAT 153 ||||||||| | ||||| |||||| || Sbjct 583039 AGCTCCCTCTTCAGAATCAAACCCTGAT 583012 >seq52249 Length=218 Score = 107 bits (118), Expect = 6e-21 Identities = 158/219 (72%), Gaps = 10/219 (5%) Strand=Plus/Plus Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 ||||| | |||||||||||| | |||||||||||||||||||||||||| ||| | Sbjct 1 CCCGTGGTCACCATGGTAGGCACAGACACTACCATCGAAAGTTGATAGGGCAGACATTCG 60 Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTT--AAGTTATTATGAATCACCAAG 280 |||| | |||||| | | || | |||||| | | | ||||| || ||||||| Sbjct 61 AATGGGTCGTCGCCGCCGCGGGGGCGTGCGATCGGCTCGAGGTTATCTAGAGTCACCAAA 120 Query 281 GAGCCCCGAAGGGC----GTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCG 334 | || | | || ||||| |||| ||| |||||| ||| | | || || |||| Sbjct 121 GCCGCCGGGCGAGCCCGGGTTGG-TTTTGGTCTGATAAATGCACGCGTCCCCGGAGGTCG 179 Query 335 G-GGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGT 372 | | | | |||||||||||||||||||||||||| || Sbjct 180 GCGCTCGTCGGCATGTATTAGCTCTAGAATTACCACAGT 218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509214517248