Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq998 129 5e-25 seq104 93.3 3e-14 seq315 84.2 2e-11 >seq998 Length=117795 Score = 129 bits (142), Expect = 5e-25 Identities = 128/162 (79%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| || |||||||| ||||| ||||| ||||||||||| || Sbjct 99121 GGTATACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTCCCCAAATTCTGCTG 99180 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 ||| ||||| || ||||| | |||||||||| |||||| || ||||| ||||| || Sbjct 99181 ATTGCTCTTCCGGTTGCAAGAGTCCTTGTACAGCATGTAAGGTGTGCCAGTCTCTGTCTG 99240 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208 ||| || |||||||| | || ||||| || | ||||||||| Sbjct 99241 GGATTCGATGATGGCATACC--AGAGCTGCTGGGCCTTCACC 99280 Score = 87.8 bits (96), Expect = 1e-12 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| ||||||||||| |||| || || | || || ||||| || | Sbjct 100432 CATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCACGCTGCTCTTCTTT 100491 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || ||||| || |||||||||||||| |||||| || ||||||| Sbjct 100492 CCCAGTG-TTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAGATGCCAAGGCTCCAGGT 100550 Query 66459 AGATGGCGAA 66468 ||||||| || Sbjct 100551 AGATGGCAAA 100560 >seq104 Length=2005322 Score = 93.3 bits (102), Expect = 3e-14 Identities = 93/118 (79%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 61256 TGGAACG-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAG 61314 ||| ||| ||| || ||||||||||| | | || || ||||||||||| ||||| ||| Sbjct 1838634 TGGCACGCTTTAGC-CAGGAGGTGCAGATCCCAGAAGCTCGTTGTTTCTATGGCTTTCAG 1838692 Query 61315 ATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 ||| ||| ||||| || ||||||||||||||||| | || || || || ||||||| Sbjct 1838693 ATTCTCATCGAGAACGTTCACTCGGAGATGTACAGCTTGCTTATAGACACTTACATCA 1838750 >seq315 Length=1270250 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| || || || ||| | | || || ||||||||||| |||||||||| Sbjct 388278 TGGAGCGGTTCAGTCAAGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCTTCCAGA 388337 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | |||||||| || | || || || ||||| || |||| || || |||||||||| || Sbjct 388338 TCGCCATGGAAAACATACATTCAGAAATGTATAGCCTTCTGATTGACACGTACATCAAGG 388397 Query 61376 A 61376 | Sbjct 388398 A 388398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397187697384320