Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq6360 315 1e-83 seq689 136 7e-30 seq73 75.2 2e-11 seq299 73.4 7e-11 >seq6360 Length=4227 Score = 315 bits (348), Expect = 1e-83 Identities = 226/259 (87%), Gaps = 1/259 (0%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||| | | | || | | ||||||||||||||||||||||||||| Sbjct 2655 GCTTCTTAGAGGGACTATGGCCGTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGT 2714 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||||||||||||||||||||||||||||| | ||||||||| || Sbjct 2715 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATCCAACGAGTATATA 2774 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||||||||| ||| | ||||||||||| ||| | ||||| |||||||||| |||| Sbjct 2775 GCCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATT 2834 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||||| ||| ||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 2835 GCAATTGTTGGTCTTCAACGAGGAATGCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGAC 2894 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 2895 TACGTCCCTGCCCTTTGTA 2913 >seq689 Length=287272 Score = 136 bits (150), Expect = 7e-30 Identities = 190/259 (73%), Gaps = 7/259 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||| ||| Sbjct 277162 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCTGA-GATTGAG-CAATAACAGGTCAGTG 277219 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 ||||||||||||||| |||| ||| |||||||||||||| | || | || | Sbjct 277220 ATGCCCTTAGATGTTTCGGGCTGCATGCGCGCTACACTGAGTGGCTCAGCTTGTGTCTAC 277279 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAA-CTCTGTCGTGCTGGGGATAGAGCATT 249 ||| || || |||| |||||| | ||||||| | | | ||| |||||| | | ||| Sbjct 277280 CCTCTGCTGGCAGGTGCGGGTAA-CCTGTTAAACCCCATTGGTGAGGGGGATCGGGGATT 277338 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||||| || | | | || ||||||| || |||||| | | ||||| ||| | |||| | Sbjct 277339 GCAATTGTTCCCCATGAAGGAGGAATTCCCAGTAAGTGTGGGTCATAAGCTTGTGTTGGT 277398 Query 310 TACGTCCCTGCCCTTTGTA 328 |||||| ||||||||| Sbjct 277399 --AGTCCCTCCCCTTTGTA 277415 >seq73 Length=3443494 Score = 75.2 bits (82), Expect = 2e-11 Identities = 78/100 (78%), Gaps = 2/100 (2%) Strand=Plus/Plus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 || || ||||||||| | |||||||||||| | | ||| |||||| || |||||| || Sbjct 1480152 TCATGATGGGGATAGGGGATTGCAATTATT-CCCCACAA-AAGGAATTCCCAGTAAGTGC 1480209 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||| | | | |||||||| ||||||| |||||||| Sbjct 1480210 AGGTCATAAACTCATGTTGATTAAGTCCCTGTCCTTTGTA 1480249 >seq299 Length=1029969 Score = 73.4 bits (80), Expect = 7e-11 Identities = 76/100 (76%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||||| ||||||||| | |||||||||||| | | | || ||||||| || ||| | Sbjct 614968 TCGTGATGGGGATAGGGGATTGCAATTATTCCCCATGAATGAGGAATTCCCTTAAAGAGT 615027 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||| || || ||||||| ||| ||||||||||| Sbjct 615028 GGGTCATAGGCTTGCATTGATTAAGTCTATGCCCTTTGTA 615067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947009716992