Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq848 518 1e-144 seq75 275 2e-71 seq23 107 6e-21 >seq848 Length=212736 Score = 518 bits (574), Expect = 1e-144 Identities = 453/567 (80%), Gaps = 41/567 (7%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| |||||| |||| |||| | ||||||||||||||||||| | Sbjct 105463 CTTCTGCTCCACGGGAGGTTTCTGGCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 105404 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||| ||| ||||||||| ||||||||||||||||| |||| | ||| || Sbjct 105403 CTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGACGCTGTCCCCGGAGCGGGTC 105344 Query 127 G------GCCCGCGAAGGAC-CTTAACGCCAGAAAATGG------TCGGTGAAGACCAGT 173 | || |||| || | ||| |||||||| | |||| | || Sbjct 105343 GCGCCCGGCGCGCGCCGGGCGCTTGGCGCCAGAAGCGAGAGCCCCTCGGGGCTCGCCCCC 105284 Query 174 TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAA 232 |||| ||| | ||||| |||||||||| || ||||||||||||||| || ||| | Sbjct 105283 -CCGCCTCACCGGGTAAGTGAAAAAACGATCAGAGTAGTGGTATTTCACCGCCGGCCGGA 105225 Query 233 ACGGC--------------------------TCCCACTTATTCTACACCTCTCAAGTCAT 266 | || |||||||||| |||||||||||| ||| Sbjct 105224 GCCGCGGCGCGGGTCGCGCGACCGCGGGGCCTCCCACTTATCCTACACCTCTCATGTCTC 105165 Query 267 TTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCA 326 |||||| | | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 105164 TTCACAGCGCCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCA 105105 Query 327 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTT 386 |||||||||||||||||||||||||||| || |||| |||||||||||||||||||||| Sbjct 105104 AGCCCGTTCCCTTGGCTGTGGTTTCGCTGGACGGTAGGTAGGGACAGTGGGAATCTCGTT 105045 Query 387 AATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCA 446 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 105044 CATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCA 104985 Query 447 TAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCA 506 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 104984 TAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTGACATTCAGAGCA 104925 Query 507 CTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||| ||||||||| Sbjct 104924 CTGGGCAGAAATCACATCGCGTCAACA 104898 >seq75 Length=3243839 Score = 275 bits (304), Expect = 2e-71 Identities = 366/507 (72%), Gaps = 45/507 (9%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | ||| |||||| |||| |||| | ||||||||||||| | ||| | Sbjct 1859393 CTTCTGCTCCATGAGAGGTTTCTGGCCTCCCTGAGCTCACCTTAGGACACCTACATTACG 1859334 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||| ||| || |||||| |||||||||||| ||| |||| | ||| | Sbjct 1859333 CTTTGACAGGTGTACCACCCCAGTCAAACTCCCCACATGATGCTGTCCCCGGAGCGGGTT 1859274 Query 127 G-GCCCGCGAAG-----GAC-CTTAACGCCAGAAAATGG------TCGGTGAAGACCAGT 173 | ||||| | | ||| ||| |||||||| | |||| | ||| Sbjct 1859273 GTGCCCGACACGTGCTGGACACTTGGCGCCAGAAGCGAGAGCCCCTCGGGGCTCACCCCC 1859214 Query 174 TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGC-GCCGAA 232 || ||||| ||||| |||| ||||| | ||||||||||||||| | | |||| | Sbjct 1859213 -CCACTTCACCAGGTAAGTGAAAACACGATCCGAGTAGTGGTATTTCACCTCCAGCCGGA 1859155 Query 233 ACGGC-------------------------TCCCACTTATTCTACACCTCTCAAGTCATT 267 | || |||||||||| |||||| ||||| || | Sbjct 1859154 GCCGCGCTGCAGTCATGTGACCACAGAGCCTCCCACTTATCCTACACATCTCATGTTTCT 1859095 Query 268 TCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAA 327 | |||| | |||||||| ||| ||||||||||| |||||||||| |||||| ||||| Sbjct 1859094 TTACAACACCAGACTAGAGACAAACTCAACAGGGTGTTCTTTCCCCATTGATTCTGCCAA 1859035 Query 328 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTA 387 |||| |||||||||||||||||| ||| || ||||| |||||||||||||||||| ||| Sbjct 1859034 GCCCATTCCCTTGGCTGTGGTTTTGCTGGACAGTAGGTAGGGACAGTGGGAATCTTGTTC 1858975 Query 388 ATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCAT 447 |||||||||||| |||||||||||||||||||||||||||||||| | | |||||| Sbjct 1858974 ATCCATTCATGCACGTCACTAATTAGATGACGAGGCATTTGGCTATATGA--AGAGTC-- 1858919 Query 448 AGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||||||| | |||| | |||| Sbjct 1858918 AGTTACTCCCGCC-TATACCGGTGCTT 1858893 >seq23 Length=5859584 Score = 107 bits (118), Expect = 6e-21 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| |||||| |||| |||| | ||||||||||||||||||| | Sbjct 5077026 CTTCTGCTCCACGGGAGGTTTCTGGCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 5077085 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||| ||| |||||||| ||||||||||||||||| |||| Sbjct 5077086 CTTTGACAGGTGTATCGCCCCAGTCAAACTCCCCACCTGACGCTGTC 5077132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634871504672