Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq848 91.5 2e-16 seq866 75.2 2e-11 seq16 73.4 6e-11 >seq848 Length=212736 Score = 91.5 bits (100), Expect = 2e-16 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| || | || |||| || || | Sbjct 105788 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGCGTGTGCTTGGCTGAGGAGCCACT 105845 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||| ||||||||||| || ||||| |||||||||||||||||||||||| Sbjct 105846 GGAGCGAGGCTACCATCTGTGGGCTTATGACTGAACGCCTCTAAGTCAGAATCC 105899 >seq866 Length=319824 Score = 75.2 bits (82), Expect = 2e-11 Identities = 66/81 (81%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 45 TGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAA 104 || |||| || || || |||| ||||||||||| || ||||| |||||||||||||| Sbjct 125494 TGGCTGAGGAGCCACTGGAGCGAGGCTACCATCTGTGGGCTTATGACTGAACGCCTCTAA 125553 Query 105 GTCAGAATCCATGCCAGAACG 125 |||||||||| |||| |||| Sbjct 125554 GTCAGAATCC-TGCCTAAACG 125573 >seq16 Length=6513609 Score = 73.4 bits (80), Expect = 6e-11 Identities = 86/114 (75%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| |||| || ||| | |||||| | ||||| | || | || |||| | || | Sbjct 9665 GTACAAGAGAAATCGCAGG-TTCAGAC-ACTTGGTGTATGTGCATGGCTGAGGTGCCACT 9608 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | | || ||||||||||| |||||||| |||||| ||||||||||||||||| Sbjct 9607 GGAGTGAGGCTACCATCTGTAGGATTATGACTGAACACCTCTAAGTCAGAATCC 9554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819040573696