Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq6360 594 2e-167 seq689 459 8e-127 seq103 129 2e-27 >seq6360 Length=4227 Score = 594 bits (658), Expect = 2e-167 Identities = 444/513 (87%), Gaps = 12/513 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | || | |||| |||| |||||||||||||||||| Sbjct 1796 GTACTCATTCCAATTACCAGACACTAACGCGCCCGGTATTGTTATTTATTGTCACTACCT 1737 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1736 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 1677 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| Sbjct 1676 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTA 1617 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| |||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 1616 GGCCCCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCA 1557 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGA--GCCCCGAAG----GG 293 | |||||| |||||| ||| ||||||| |||||||| | ||| | | | || | Sbjct 1556 CGAAGGCCGTGCGATCCGTCAAGTTATCATGAATCATC--GGATCGGCGGGCAGAGCCCG 1499 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| | ||||||||||||||| | ||||| || ||||||||||||| | ||| ||||| Sbjct 1498 CGTCAGCCTTTTATCTAATAAATGCGCCCCTCCCGGAAGTCGGGGTTTGTTGCACGTATT 1439 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| |||| | |||| |||||| |||| |||||||| Sbjct 1438 AGCTCTAGAATTACTACGGTTATCCGAGTAG-CACGTACCATCAAACAAACCATAACTGA 1380 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || ||| | | ||||||| |||||||||||| Sbjct 1379 TTTAATGAGCCATTCGCAGTTTCACAGTTCGAATTAGTTCATACTTACACATGCATGGCT 1320 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 1319 TAATCTTTGAGACAAGCATATGACTACTGGCAG 1287 >seq689 Length=287272 Score = 459 bits (508), Expect = 8e-127 Identities = 417/516 (81%), Gaps = 16/516 (3%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 276294 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 276235 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 276234 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 276175 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||| Sbjct 276174 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTGGTCACCATGGTAG 276115 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || | |||||||||||||||||||||||||| ||| ||||| | |||||| | | Sbjct 276114 GCACAGACACTACCATCGAAAGTTGATAGGGCAGACATTCGAATGGGTCGTCGCCGCCGC 276055 Query 242 AAGGCCATGCGATTCGTT--AAGTTATTATGAATCACCAAGGAGCCCCGAAGGGC----G 295 || | |||||| | | | ||||| || ||||||| | || | | || | Sbjct 276054 GGGGGCGTGCGATCGGCTCGAGGTTATCTAGAGTCACCAAAGCCGCCGGGCGAGCCCGGG 275995 Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGG-GGTTTTTAGCATGTATT 352 |||| |||| ||| |||||| ||| | | || || ||||| | | | ||||||||| Sbjct 275994 TTGG-TTTTGGTCTGATAAATGCACGCGTCCCCGGAGGTCGGCGCTCGTCGGCATGTATT 275936 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTA---GTAAGGTA-CTATCAAATAAACGATAA 408 ||||||||||||||||| |||||||| | | | | || | | | |||| ||| |||| Sbjct 275935 AGCTCTAGAATTACCACAGTTATCCAAGGAGCGGGAGGGGAGCGACCAAAGGAACCATAA 275876 Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATG 468 ||||||||||||||||||||||||||||||||| | | | ||||| ||||||||| Sbjct 275875 CTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGCCCGTGTGCACTTACACATGCATG 275816 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||| |||||||||| Sbjct 275815 GCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 275781 >seq103 Length=2677425 Score = 129 bits (142), Expect = 2e-27 Identities = 119/148 (80%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 8 TTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTAT-TGTCACTACCTCCCCG 65 ||||||||||||| || |||||||| ||||||| ||||| | |||||||||||||| Sbjct 2069868 TTCCAATTACAAGGCCTCAAAAGAGTCCTGTATTGTTATTTTTCTGTCACTACCTCCCTA 2069927 Query 66 TGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCA 125 ||| ||| | ||||| ||| ||||||||||||||||||||| ||||||| ||| Sbjct 2069928 GGTCAGGAGTAGGTAACCTGCACGCCTGCTGCCTTCCTTGGATCTGGTAGCATCCCTTCA 2069987 Query 126 GGCTCCCTCTCCGGAATCGAACCCTAAT 153 ||||||||| | ||||| |||||| || Sbjct 2069988 AGCTCCCTCTTCAGAATCAAACCCTGAT 2070015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510096575744